Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120825.seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28360.1 68416.m03544 ABC transporter family protein similar ...    28   5.1  
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   8.9  
At2g05082.1 68415.m00531 hypothetical protein                          27   8.9  

>At3g28360.1 68416.m03544 ABC transporter family protein similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1158

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 146 IINIKNSD*YFQAFL---LANIILGCIFFIGKYVNGYMLIYSMCL 21
           I ++ +     Q FL   L NI++    F+G Y+ G+ML++ + +
Sbjct: 57  ITSVSSDSLVIQDFLSEKLPNILMNASAFVGSYIVGFMLLWRLTI 101


>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 443 GKKIILATKQLKDWFVNK 390
           GKK+ L +KQ+K WF N+
Sbjct: 91  GKKLTLESKQIKFWFQNR 108


>At2g05082.1 68415.m00531 hypothetical protein
          Length = 231

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 434 IILATKQLKDWFVNKWCEFIYIRQTNHTKV 345
           I +A  Q+ DWFVN W + I +   N+  +
Sbjct: 140 ICIAVGQICDWFVNHWLKRINLITYNYEPI 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,239,209
Number of Sequences: 28952
Number of extensions: 283947
Number of successful extensions: 573
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)