Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120824.seq
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425...    30   2.0  
01_05_0262 - 20137391-20137861,20137937-20138100,20138140-201382...    28   6.0  
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    28   8.0  

>04_01_0316 +
           4251465-4251590,4251664-4251719,4252973-4253087,
           4253174-4253417,4254189-4254325,4255006-4255065,
           4255336-4255460,4256021-4256048,4256267-4256336,
           4256513-4256565,4256966-4257025,4257498-4257544,
           4257617-4257741,4258572-4258686,4258778-4258826,
           4260415-4260471,4261126-4261209,4261363-4261442,
           4262005-4262094,4262252-4262375
          Length = 614

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 55  VKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASS 162
           V+ G FK  ED   +   L++ N++ +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367


>01_05_0262 -
           20137391-20137861,20137937-20138100,20138140-20138220,
           20138437-20138614,20138786-20139164,20139183-20139358
          Length = 482

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
 Frame = -3

Query: 478 LFNHTIICVH--LDGRRVLARAQHCGITSSSSHACNSTA*GSLLFIISWITP--SLVMST 311
           L  +   C H  +D R +L    + G+T  S    ++ A G+       +    S V   
Sbjct: 140 LHEYVAACPHHGIDDRLILQNFYN-GLTPMSRDHLDAAAGGAFFSKTGTVKALDSHVTCE 198

Query: 310 VCG-CRYSGSPCLTTLSGAGYM 248
           VCG   +SG+ CL T  GA YM
Sbjct: 199 VCGNTGHSGNDCLETREGAMYM 220


>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 431 YAPAVKMDTNYGVIEELNKKLAFASEVW 514
           Y P  K+  N+ V++++N +  F  EVW
Sbjct: 359 YVPDTKLKGNWQVVQKVNHRHLFDPEVW 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,908,993
Number of Sequences: 37544
Number of extensions: 408064
Number of successful extensions: 998
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)