Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120824.seq
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01640.1 68417.m00213 hypothetical protein                          31   0.72 
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con...    31   0.72 
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    28   5.0  

>At4g01640.1 68417.m00213 hypothetical protein 
          Length = 300

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 374 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRVYGID 240
           +S REL + N LD+ L   E     QV W    DH  W  +Y ID
Sbjct: 185 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 228


>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
           contains Pfam PF00646: F-box domain; contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
           weakly similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 391

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -2

Query: 374 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRVYGID 240
           +S REL + N LD+ L   E     QV W    DH  W  +Y ID
Sbjct: 276 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 319


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
            senescence-responsive receptor-like serine/threonine
            kinase, putative (SIRK) similar to light repressible
            receptor protein kinase [Arabidopsis thaliana]
            gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
            Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
 Frame = +3

Query: 216  QNDVQRVGVY---TIYPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVEL-Q 383
            ++DV  +GV     I   P     + + +++  H   I   G I+ I+  +L    ++  
Sbjct: 754  KSDVYSLGVVLLEVITGQPAIASSKTEKVHISDHVRSILANGDIRGIVDQRLRERYDVGS 813

Query: 384  AWLLEEVIPQCCARASTRRPSRWTQIMV*LK 476
            AW + E+   C    S +RP+  +Q+++ LK
Sbjct: 814  AWKMSEIALACTEHTSAQRPT-MSQVVMELK 843


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,669,443
Number of Sequences: 28952
Number of extensions: 305328
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)