Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120823.seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   107   2e-24

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  107 bits (256), Expect = 2e-24
 Identities = 45/67 (67%), Positives = 56/67 (83%)
 Frame = +2

Query: 230 SIFIIIITTVLAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 409
           SI +++   VLAG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P F
Sbjct: 199 SILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAF 258

Query: 410 GIISHII 430
           G++SHII
Sbjct: 259 GVVSHII 265



 Score = 58.8 bits (136), Expect = 7e-10
 Identities = 34/77 (44%), Positives = 40/77 (51%)
 Frame = +3

Query: 3   ARVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXX 182
           A  E G G G TVYPPLSS  +H G ++DLAI SL L GISS                  
Sbjct: 123 ALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPG 182

Query: 183 XSFDQLPLFV*AVGITA 233
            S  Q+PLF  A+ IT+
Sbjct: 183 LSLYQMPLFAWAIMITS 199



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 21/36 (58%), Positives = 34/36 (94%)
 Frame = +1

Query: 499 VIRIIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTG 606
           ++ ++V +HH+FTVG+D+DTRAYF++AT++IA+PTG
Sbjct: 288 LLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTG 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,961
Number of Sequences: 5004
Number of extensions: 33483
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)