Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120823.seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    30   1.4  
U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    29   2.4  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical p...    27   9.6  

>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +2

Query: 233 IFIIIITTVLAGAITILLT-----DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 397
           I+I++   +    ITI L      + N ++ F DP  G DP LY++    F +  V I  
Sbjct: 163 IYIVLGICLAYFLITIFLVKPVVFNENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAICT 222

Query: 398 LPGFGIISHI 427
           +  +G IS++
Sbjct: 223 IVFYGYISYV 232


>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 233 IFIIIITTVLAGAITILLTDRNLNTS-FFDPAGGGDPILYQHL 358
           +FIIII  + A   T  L  R   +S FFDP  G DP  Y ++
Sbjct: 156 MFIIIIFWIFASFFTKPLLYRAQYSSWFFDPNVGNDPSFYHNI 198


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 386 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 291
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 386 KLQDVQKIKINVDIKLGLLLQQDQKMMYLSFD 291
           KLQD+QK+K +VD+ +   L +D+  + +  D
Sbjct: 822 KLQDIQKVKQDVDVSIFEELGEDETCLEVRAD 853


>Z93388-12|CAB07661.2|  294|Caenorhabditis elegans Hypothetical
           protein T10C6.4 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 340 NFISTFILIFWTS*SLYFNFTRIWYNFSYYF 432
           N++ T+I+I WT   + +++   +YN S+ F
Sbjct: 111 NYVLTYIIINWTLPPVIYSYFFFFYNCSFPF 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,549,245
Number of Sequences: 27780
Number of extensions: 196675
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)