Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120822.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   4.4  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.8  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   5.8  

>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 667 LVKVNLLRKSKFGNSKVWKSTLXFSLXSASRPALVRTF--SRRFNFFNATSSKK 512
           L +VN + KS+ G SKV KST  F++   +   L  TF  +R     N  S++K
Sbjct: 93  LSQVNRI-KSRCG-SKVLKSTTKFTIPKTAAKCLCNTFLNARLLQIVNNPSARK 144


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 277 PFLNSRYFSFPMF--SFIQVYQISSKSGTLKKSLI*TDNYNLTAYSLYSLD 131
           P  ++RY   P    SFI+VY+  S  GT  ++L+  +  N    + YS D
Sbjct: 508 PSKHNRYIDLPYIPGSFIKVYKNGSYMGTAFENLLDFNPPNSINSNHYSFD 558


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 368 LQLLQIQQHACIHQRELTLFRHLMYLYL 285
           L++L+I  +A IHQ E+  F HL  LY+
Sbjct: 781 LRILRISNNA-IHQLEVDQFPHLRTLYM 807


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 437 KVALCLGMFY*KRQHPYQLDADELQLLQIQQHACIHQRELTLFRHLMYLYLICA 276
           KV    G+ Y +  HP+  + D    L++  +    Q+ L   + + Y+Y  CA
Sbjct: 76  KVIWRRGLAYLRLGHPHLANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRECA 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,343,546
Number of Sequences: 5004
Number of extensions: 42783
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)