Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120822.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    29   3.1  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    28   5.4  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    27   9.4  

>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical protein
            F22E10.3 protein.
          Length = 1327

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -1

Query: 235  FIQVYQISSKS---GTLKKSLI*TDNYNLTAYSLYSLDLFLYIKAFTSIVHG 89
            F   YQ SSK      LKK +I   NY+LT   +Y +  F Y      I  G
Sbjct: 969  FFDHYQTSSKQQKRSELKKGMIEAINYSLTQSFMYFMMCFTYAVGIRIIYQG 1020


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
            related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -1

Query: 235  FIQVYQISSKS---GTLKKSLI*TDNYNLTAYSLYSLDLFLYIKAFTSIVHG 89
            F   YQ SSK      LKK +I   NY+LT   +Y +  F Y      I  G
Sbjct: 969  FFDHYQTSSKQQKRSELKKGMIEAINYSLTQSFMYFMMCFTYAVGIRIIYQG 1020


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical protein
            T25G3.2 protein.
          Length = 1322

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 265  SRYFSFPM-FSFIQVYQISSKSGTLKKSLI*TDNYNLTAYSLYSLDLFLYIKAFTSIVHG 89
            ++Y S    F  + V   +S    L+  L  T  + +T   ++     L+ K FT+I+HG
Sbjct: 896  AKYMSIAYAFVMLAVLVATSSQIVLETVLAPTSLFIVTMVGIFFFAACLHPKEFTNIIHG 955

Query: 88   SV*IIFLLML 59
               ++F LM+
Sbjct: 956  ---VVFFLMI 962


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase 1
            protein.
          Length = 1322

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -1

Query: 265  SRYFSFPM-FSFIQVYQISSKSGTLKKSLI*TDNYNLTAYSLYSLDLFLYIKAFTSIVHG 89
            ++Y S    F  + V   +S    L+  L  T  + +T   ++     L+ K FT+I+HG
Sbjct: 896  AKYMSIAYAFVMLAVLVATSSQIVLETVLAPTSLFIVTMVGIFFFAACLHPKEFTNIIHG 955

Query: 88   SV*IIFLLML 59
               ++F LM+
Sbjct: 956  ---VVFFLMI 962


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 345 TRLYTSTGTDFVPSFDVLVFNLRRF-LTAVTFLFPCLV 235
           T ++TS      P+  +++F +  F L  VT LFPCLV
Sbjct: 92  TGIFTSWCASVEPNGYLIIFLIITFYLNYVTMLFPCLV 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,572,037
Number of Sequences: 27780
Number of extensions: 228807
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)