Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120822.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR...    29   2.9  
At3g08930.2 68416.m01039 LMBR1 integral membrane family protein ...    27   8.8  

>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1193

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 351 NLKKLKLICVQLIRMLPFSIKHA 419
           NLK+LKL C  L++ LP SI  A
Sbjct: 693 NLKRLKLACCSLLKKLPSSIGDA 715


>At3g08930.2 68416.m01039 LMBR1 integral membrane family protein
           contains 5 transmembrane domains; contains Pfam PF04791:
           LMBR1-like conserved region; similar to unknown protein
           GB:BAA83351 [Oryza sativa]
          Length = 526

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 156 LPIHSIHWICFYILKLLLASFTVVFELFFF 67
           LP+  + W+  YI+  +L  F + F +FF+
Sbjct: 83  LPMKDL-WLAIYIVDAILVFFVIPFAMFFY 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,579,090
Number of Sequences: 28952
Number of extensions: 199815
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)