Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120821.seq
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.59 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.59 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   3.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   7.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   9.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 1    GTRFPVMYDHESSYIFVSKDILQLKGTMNAFYAPKQRILSILAINRLFGATETI 162
            G R  + Y  E+S + +SK+ LQL+     F      IL I  +  LF    TI
Sbjct: 1300 GVRTNITYIEETSEVHISKEYLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTI 1353


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 1    GTRFPVMYDHESSYIFVSKDILQLKGTMNAFYAPKQRILSILAINRLFGATETI 162
            G R  + Y  E+S + +SK+ LQL+     F      IL I  +  LF    TI
Sbjct: 1300 GVRTNITYIEETSEVHISKEYLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTI 1353


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 1    GTRFPVMYDHESSYIFVSKDILQLKGTMNAFYAPKQRILSILAINRLFGATETI 162
            G +  + YD  +  + +SK+ LQL+     F      IL I  +  LF    TI
Sbjct: 1300 GVKTNITYDESTQEVHISKEYLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTI 1353


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 1    GTRFPVMYDHESSYIFVSKDILQLKGTMNAFYAPKQRILSILAINRLFGATETI 162
            G +  + YD  +  + +SK+ LQL+     F      IL I  +  LF    TI
Sbjct: 1300 GVKTNITYDESTQEVHISKEYLQLEPIGLVFVFFFALILVIQFVAMLFHRFGTI 1353


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 307 EVITKVRLS*NPFAI*IRGFR 369
           E ITK++++ NPFA   +GFR
Sbjct: 184 EKITKLKINYNPFA---KGFR 201


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 512 FGCSSNYCFNNYVCSI 559
           + C SN C N  VC I
Sbjct: 378 YDCDSNPCQNGGVCRI 393


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 86  TRSTRPSSVY*VFWL*IVCLAPRKLSTFIPTCSCTG 193
           TRS  P +    FWL     AP   +  I  C+ TG
Sbjct: 24  TRSNSPEAGGGGFWLAAASGAPHPAALPIEGCNETG 59


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 86  TRSTRPSSVY*VFWL*IVCLAPRKLSTFIPTCSCTG 193
           TRS  P +    FWL     AP   +  I  C+ TG
Sbjct: 24  TRSNSPEAGGGGFWLAAASGAPHPAALPIEGCNETG 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,239
Number of Sequences: 336
Number of extensions: 2826
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)