Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120821.seq
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141     29   4.6  
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388...    28   6.1  
06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     28   8.1  
02_02_0554 - 11434744-11435364,11435741-11436442                       28   8.1  

>06_02_0306 + 14115751-14116450,14116882-14117691,14118957-14119141
          Length = 564

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 352 KSRRDFNSDELS*SPLIKRYAGTVFENTCLTKKLFRSYQQHTRRPS 215
           K+RR F  DE +  P  +RY GT++  T +  ++   Y   T  PS
Sbjct: 346 KARRLFQDDEKAAPPSAERYVGTLY--TKVGDEVLHKYTTPTATPS 389


>04_04_0224 -
           23738105-23738273,23738364-23738472,23738702-23738804,
           23738895-23738926,23739342-23739592,23739639-23739754,
           23740271-23740526,23740760-23740847,23740985-23741062,
           23741238-23741313,23741532-23741590,23742639-23742711
          Length = 469

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 354 LNREGISTQTNFRNHLLLKDMQ 289
           +NREGIS   N  N LLLK +Q
Sbjct: 77  INREGISYYNNLINELLLKGVQ 98


>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 256 KLFRSYQQHTRRPSNGPAANSAGTRAGW 173
           +L    +Q+   P  GPA NS+G  AGW
Sbjct: 334 RLSEEDKQNMPLPVQGPACNSSGHLAGW 361


>02_02_0554 - 11434744-11435364,11435741-11436442
          Length = 440

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 352 KSRRDFNSDELS*SPLIKRYAGTVFENTCLTKKLFRSYQQHTRRPS 215
           K RR F  DE +  P  +RY GT+F  T    ++   Y   T  PS
Sbjct: 255 KMRRIFQHDEKAAPPPTERYVGTLF--TKAGDEVLHKYTTPTATPS 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,157
Number of Sequences: 37544
Number of extensions: 268416
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)