Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120821.seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)                       30   2.0  
SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)                    29   2.7  
SB_28959| Best HMM Match : Metallophos (HMM E-Value=2.8)               29   4.7  

>SB_458| Best HMM Match : DUF19 (HMM E-Value=1.5)
          Length = 518

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 294 YLLIRGDYESSSELKSLRDLNPWVQNTLLKLL 389
           Y L+RG  +SS E+KS+R  +PW    LL L+
Sbjct: 68  YYLVRGFLKSSEEMKSIRH-SPWSVVALLTLV 98


>SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)
          Length = 285

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 127 AINRLFGATETIDFHPNLLVYRQSSPPVRLTGDVYVVDKNEKVF 258
           A++RL  A+  +  H N  + R S  P  +TG+ Y+    ++++
Sbjct: 9   ALSRLHRASFHLTLHDNQFLGRASEQPCDVTGEYYINQPRDRIY 52


>SB_28959| Best HMM Match : Metallophos (HMM E-Value=2.8)
          Length = 597

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 48  CEQRHFAIERHYERVLRAQAAYIKYFGYKSFVWRHGNYRLSSQPARVPAEFAAG 209
           CE R+F+ + H   VL+A++  +++ G +S +   G   L+  P  +   + +G
Sbjct: 142 CEMRYFSYDGHGVPVLKARSNTVEFKG-RSAIPLQGRIALTGDPTEMRVMWTSG 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,305,412
Number of Sequences: 59808
Number of extensions: 339075
Number of successful extensions: 829
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)