Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120821.seq
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 16/61 (26%), Positives = 26/61 (42%)
 Frame = -1

Query: 300  KDMQAPCLRTRV*LKNFFVLINNIHVARQTDRRRTLPVHEQVGMKVDSFRGAKQTIYSQN 121
            +D++ PCL   V        +    V + +DR R LP       +VD     + + Y +N
Sbjct: 1292 EDVKLPCLAVGVPAPEVTWKVRGA-VLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCYVEN 1350

Query: 120  T 118
            T
Sbjct: 1351 T 1351


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 73  SIAKCLCSQKCTTIH 29
           +IA C+C +KC   H
Sbjct: 100 TIAVCVCMRKCPRRH 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,124
Number of Sequences: 438
Number of extensions: 3482
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)