Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120821.seq
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37080.1 68418.m04451 hypothetical protein includes At5g37080...    29   3.9  
At5g22180.1 68418.m02582 hypothetical protein                          28   6.8  

>At5g37080.1 68418.m04451 hypothetical protein includes At5g37080,
           At5g37170, At2g05090
          Length = 566

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 213 TDRRRTLPVHEQVGMKVDSFRGAKQTIYSQNT*YTLLGRVERV 85
           TD  +  PV + V + +  F G K   Y +N    +LG+V RV
Sbjct: 132 TDVIKCDPVSDSVFLDLADFEGVKTESYDENVLIDILGQVVRV 174


>At5g22180.1 68418.m02582 hypothetical protein
          Length = 169

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 94  YAPKQRILSILAINRLFGATETIDFHPNLLVYRQSSPPVRLTGD 225
           + P+QR+L  + ++    AT  IDF    LV   SS P++  GD
Sbjct: 58  FMPRQRLLESITVSPSSSATLHIDF----LVKPSSSCPIQYNGD 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,501,536
Number of Sequences: 28952
Number of extensions: 227419
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)