Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120820.seq
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 28 1.5
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 2.5
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 2.5
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.5
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 27 2.5
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 3.4
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 4.4
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 4.4
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 5.9
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 25 7.8
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +1
Query: 4 TMNFWATFSICLVGYLVYAGHLNNELQEIKSIL-VVMYESMEKHFSNVVDEIDSL----K 168
TM FWA FS+ ++ + G L+EI+S+L V + + + ++DSL K
Sbjct: 345 TMAFWAIFSLPMIQKALPKG----VLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCK 400
Query: 169 TDTFMMLSNLQNNT 210
TDT S+ NT
Sbjct: 401 TDTGCCSSSCCKNT 414
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 352 YINLVISSVY*TLSRLLTTPFFVNST 275
YIN V + TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -1
Query: 629 LVGNEQXVRKSNGRSVKVHQY-WTVFMTRSARIVDHFSMFRWMVNKSC 489
+VG+E +R +GR VK +Y W + + D F R ++ +SC
Sbjct: 229 IVGSEDDIRTPDGRVVKGREYPWGIVEIENEEHCD-FKQLRNILIRSC 275
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 170 VLRESISS-TTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQ 33
+ ++S+SS TTL K S SY+ T+ + + +S FK T P +
Sbjct: 544 IQQKSVSSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNE 590
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 139 NVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLT 276
N+V + + + +M S +NT R WD +G +IS + T
Sbjct: 356 NLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIYTISRAEKT 401
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 124 EKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLTC 279
E H V+D + S D + S Q++TI+TWD + I+ L C
Sbjct: 266 EGHTGPVMDIVFS--DDPSVAYSVGQDHTIKTWDLITGQNVDSKITKAPLLC 315
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 493 LLFTIHLNIEK*STMRADRVINTVQYWWTFTERPFDL 603
LLF+IHL K + D V NT++ W RP+ +
Sbjct: 1079 LLFSIHL--VKPNVETNDEVCNTLKAWENIESRPYTI 1113
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 4.4
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +3
Query: 438 RHGLH-LSKFKNAFASVSTTFVHHPSKHRKMI--XDAGGS 548
R GL SKF AFAS+S+ F+H+ HR DA GS
Sbjct: 39 RSGLSKFSKFVYAFASISSGFLHY-QLHRAAAPKYDARGS 77
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 157 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKI 252
D K+ T +M+S +NT+R WD VK GK++
Sbjct: 59 DINKSST-LMVSGAADNTMRLWD--VKTGKQL 87
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +1
Query: 112 YESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 231
Y + +++ +++D +S D S+ NN++ TW+ +
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVI 329
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 73 NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNN-TIRTW 222
N L E K L+ + K NVV I ++ D+ + + NN IR W
Sbjct: 81 NSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKW 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,681,283
Number of Sequences: 5004
Number of extensions: 52915
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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