Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120820.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667...    33   0.21 
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602...    33   0.28 
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    29   2.6  
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440...    29   2.6  
02_03_0277 + 17218693-17219188,17219278-17220269                       28   6.0  
08_01_0168 - 1385439-1385979,1386081-1387438                           28   8.0  
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755     28   8.0  

>04_04_1312 +
           32565447-32565585,32566008-32566060,32566139-32566771,
           32566844-32566972,32567052-32567144,32567220-32567336,
           32567412-32567512,32567603-32567870,32568236-32568265,
           32568361-32568572,32568650-32568731,32568804-32569555,
           32569640-32569811,32570412-32570498,32570578-32570895,
           32570982-32571107
          Length = 1103

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 215 RIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 78
           R +   +L   I +++L   +S     +CF    YM TSI FI C+
Sbjct: 422 RSMFSTELKTKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 467


>04_04_1311 -
           32559549-32559674,32559761-32560078,32560158-32560244,
           32560845-32561016,32561101-32561852,32561925-32562006,
           32562084-32562295,32562391-32562420,32562786-32563074,
           32563143-32563243,32563319-32563435,32563511-32563603,
           32563683-32563811,32563884-32564516,32564765-32564844,
           32565152-32565164
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 182 INVSVLRESISSTTLEKCFSIDSYMTTSIDFISCS 78
           I +++L   +S     +CF    YM TSI FI C+
Sbjct: 407 IKINILDHEVSERNYVECFKQQGYMNTSIMFIQCA 441


>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
            3983250-3983301,3983497-3983654,3983756-3985617,
            3986029-3986093,3986176-3986340,3986836-3986893,
            3987479-3987590,3987661-3987712,3988080-3988140,
            3988220-3988377,3988705-3988787,3988897-3988945,
            3989122-3989185,3990225-3990317,3990410-3990543,
            3991364-3991585,3991815-3991937,3992103-3992267,
            3993064-3993450
          Length = 1479

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 121  MEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLTC 279
            +E H  +V+D   S KTD   +LS+  + T+R WD   K   K+      +TC
Sbjct: 1238 LEGHQDDVLDLTWS-KTD--QLLSSSMDKTVRLWDTTTKACLKVFAHNDYVTC 1287


>11_01_0559 -
           4406815-4406922,4408954-4409042,4409177-4409270,
           4409344-4409481,4409570-4409727,4409826-4409916,
           4410003-4411637
          Length = 770

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 118 SMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISISTKKLTC 279
           S+E H  +V+D   S+ +   ++LS+  + T+R WD   K   K+      +TC
Sbjct: 527 SLEGHLDDVLDLAWSMYSQ--LLLSSSMDKTVRLWDTEAKACLKLFPHNDYVTC 578


>02_03_0277 + 17218693-17219188,17219278-17220269
          Length = 495

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 447 LHLSKFKNAFASVSTTFVHHPSKHRKMIXDAG 542
           LHL+K  +A   V  TFVH     R++I   G
Sbjct: 24  LHLAKLLHARGGVRVTFVHSERNRRRVIRSHG 55


>08_01_0168 - 1385439-1385979,1386081-1387438
          Length = 632

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 158 SISSTTLEKC--FSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQMLNVAQK 12
           SI S T E    FS++  MT ++D+ S SS+     +    TK   N++ K
Sbjct: 180 SIVSVTNESLPDFSLNGSMTATVDYNSSSSILSVKLWINDTTKPPYNLSDK 230


>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
          Length = 482

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 148 DEIDSLKTDTFMMLSNLQNNTIR 216
           +EI+ LK+D   + S LQNNT++
Sbjct: 170 EEIERLKSDNAALSSELQNNTLK 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,453,285
Number of Sequences: 37544
Number of extensions: 302580
Number of successful extensions: 707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)