Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120820.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical pr...    35   0.047
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine re...    28   5.4  
Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>L23646-6|AAU87821.1|  469|Caenorhabditis elegans Hypothetical
           protein F44E2.7d protein.
          Length = 469

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 21/77 (27%), Positives = 40/77 (51%)
 Frame = +1

Query: 400 NNVMFDDASVLWIDTDYIYQNLKMPLQAFQQLLFTIHLNIEK*STMRADRVINTVQYWWT 579
           NNV  D +++      Y  + L   L+ +QQ +  +H  + +   + +D  ++T+   W+
Sbjct: 14  NNVRVDPSTLNHYLCYYCGKTLSDRLE-YQQHMLKVHEVMSQSYQLWSDHTMDTLGLIWS 72

Query: 580 FTERPFDLRTXCSLPTS 630
            ++R +D  T CSLP S
Sbjct: 73  ESKRSYDRDTSCSLPAS 89


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
            protein Y42A5A.1 protein.
          Length = 1045

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = +1

Query: 52   VYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 231
            VY+  +N+  QE    L   +  M +H+    D I      T +  +N++ N+ R W  V
Sbjct: 873  VYSAAINDGTQEDFDFLYKKW--MIEHYMMEHDNIF-----TGLCTTNIRENSDRAWRQV 925

Query: 232  VKNGKKISISTKKLTC 279
            +KNG + ++  +   C
Sbjct: 926  IKNGARENVMVRAQLC 941


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 230 TASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 81
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine
           receptor, class x protein14 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
 Frame = -2

Query: 382 KIL*RLYDF*YINLVISSVY*TLSRLLTTPFFVNSTLIFSSRLIFFC-------HFLQLR 224
           KI+ ++Y F +I+++ S +  +L  LL+      +  IFS +   FC        F ++ 
Sbjct: 109 KIIGQIYTFIWISIIWSHILLSLCSLLSVHIPSRNQSIFSRQNCIFCLIFIFSLSFFEIG 168

Query: 223 PTF--ESCYFA 197
           P F  E+C+ A
Sbjct: 169 PLFAYETCFIA 179


>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -1

Query: 239 FFTTASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCP 60
           FF   S+   + F K +  +NVS+L +++S + +   F ++ ++T    F+     F  P
Sbjct: 219 FFNFTSYFTTLFFFKTMPRLNVSIL-QTLSVSVM--FFLMNRHLTLIPQFLVSIKRFNFP 275

Query: 59  AYTK*PTKQM 30
            +   P+ +M
Sbjct: 276 KFNNFPSSKM 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,840,287
Number of Sequences: 27780
Number of extensions: 299208
Number of successful extensions: 840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)