Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120820.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.3  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   8.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.3  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 HDSNVGRSCKKWQKNINLDEKI 272
           +++N   +CKK   NIN  E+I
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQI 122


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 HDSNVGRSCKKWQKNINLDEKI 272
           +++N   +CKK   NIN  E+I
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 HDSNVGRSCKKWQKNINLDEKI 272
           +++N   +CKK   NIN  E+I
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 207 HDSNVGRSCKKWQKNINLDEKI 272
           +++N   +CKK   NIN  E+I
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQI 122


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 234 KKWQKNINLDEKI 272
           K+W+KN+NL + +
Sbjct: 92  KEWKKNLNLRDSV 104


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 181 MMLSNLQNNTIRTWDAVVKNGKKI 252
           M+ +    N +  WD  VKN + I
Sbjct: 76  MIATKAMKNDVILWDFFVKNARMI 99


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 181 MMLSNLQNNTIRTWDAVVKNGKKI 252
           M+ +    N +  WD  VKN + I
Sbjct: 50  MIATKAMKNDVILWDFFVKNARMI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,361
Number of Sequences: 438
Number of extensions: 3470
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)