Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120820.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03050.1 68415.m00258 mitochondrial transcription termination...    33   0.18 
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit...    31   0.95 
At4g01650.1 68417.m00214 expressed protein                             29   3.8  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    28   6.7  
At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR ...    27   8.8  

>At2g03050.1 68415.m00258 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 283

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = -3

Query: 609 RSQIKRTLRKSPPVLDRVYDTIRPHRXSFFYV*MDGEQKLLKRLQRHF*ILINVIRVDPK 430
           R ++ + + +SP +L    D     +  FF   M G+ K LKR  ++F   +   ++ P+
Sbjct: 186 REEVAKMVVRSPALLTYSVDNNLVPKVEFFIEEMRGDVKELKRFPQYFSFSLE-RKIKPR 244

Query: 429 NRRVVEHNVIRRL 391
           +R + EH ++  L
Sbjct: 245 HRLLKEHGILMPL 257


>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
           to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
           thaliana]
          Length = 170

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 94  SILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDA 228
           +IL ++ E  +KH  + VD+ D     T   ++    N +RTWDA
Sbjct: 50  NILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDA 94


>At4g01650.1 68417.m00214 expressed protein 
          Length = 288

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 304 LTTPFFVNSTLIFSSRLIFFCHFLQLRPTFES 209
           L T F  +STL+ SSR  F C F    P F S
Sbjct: 40  LITSFSPSSTLLASSRRCFTCRFGDSSPRFNS 71


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 188 NIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCPA 57
           N+IN+  L  S  S+ +E   SI +     +D   CSSL + P+
Sbjct: 377 NLINLKTLNLSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELPS 420


>At5g63020.1 68418.m07906 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 888

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = +1

Query: 55  YAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVV 234
           + GH+++    +  +LVV+  SM +   ++ +EI    +  ++ LS  +   IR W A +
Sbjct: 544 FLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEISECVSLQYLSLSRTR---IRIWPAGL 600

Query: 235 KNGKKI 252
              +K+
Sbjct: 601 VELRKL 606


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,652,466
Number of Sequences: 28952
Number of extensions: 261297
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)