Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120819.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0060 + 3729613-3729863,3730377-3730392                           28   6.0  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   6.0  
02_04_0175 + 20642877-20643618,20643844-20643955,20644052-206441...    28   8.0  
01_07_0265 + 42404297-42404479,42404544-42404723,42404811-42405440     28   8.0  

>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 213 ANWPPGRY*ALRLIVCSRLIPPIRC 139
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 168 CSRLIPPIRC-SALNWATPRLR 106
           CS  +PP+RC   L W+ PR++
Sbjct: 23  CSSRLPPLRCFVGLRWSAPRIQ 44


>02_04_0175 +
           20642877-20643618,20643844-20643955,20644052-20644174,
           20644258-20644509,20644510-20644639,20644719-20644928,
           20645280-20645426
          Length = 571

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 595 ECSWICAIRALLVRXAAPCW-GRSSTQSCCDFESQHAIVLYSFSGRYTFEYNK 440
           ECSW+  I + L R  AP + G        D  S   +++   SGR   +YN+
Sbjct: 398 ECSWLL-IFSTLYRYVAPEYAGTGMLNETSDVYSFGILIMEIISGRVPVDYNR 449


>01_07_0265 + 42404297-42404479,42404544-42404723,42404811-42405440
          Length = 330

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +3

Query: 486 MACCDSKSQHDCVLDRPQH--GAAXRTRSARIAQIQLHSXVHEKTRQLSKFYWEN 644
           + CCD+       L  P     A  R R A++A   L   V E  RQ+ +  WEN
Sbjct: 28  LLCCDAMLSTVAFLTFPLRLLAAVDRERKAKLAL--LDRLVGEMQRQMERLVWEN 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,530,895
Number of Sequences: 37544
Number of extensions: 359170
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)