Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120819.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)       33   0.29 
SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)                   31   1.2  
SB_29786| Best HMM Match : I-set (HMM E-Value=0)                       29   4.7  
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   8.1  

>SB_28145| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.5e-05)
          Length = 340

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = -2

Query: 484 VLYSFSGRYTFEYNKHGFKFLDIKVCGAARHGHITRCAGRVWRFNSIVVYGAQKNAVSAH 305
           ++ S+  R +FE NK+   ++  K C     G+I    G     + +VV G+  NA+   
Sbjct: 203 LMRSYKFRLSFE-NKNCVDYITEKYCYPLEKGNIPIVLGGASYDSKLVVPGSYINALDFP 261

Query: 304 FVGALFDYVVY 272
            V AL DY+ Y
Sbjct: 262 SVKALADYIQY 272


>SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)
          Length = 214

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 519 NHAVTSNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLL 379
           NH  TS    PLSS+     +PL++I+   +SL+S    P  ++T +
Sbjct: 17  NHRHTSTTTSPLSSS---STLPLSSISSSSSSLLSTITTPYSIITTI 60


>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
          Length = 6300

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 401  GTANFDIKEFKSMFIVFKGITPTKTVEDNGMLRFEVT 511
            GT  FD+K   +   +F+G    K +ED+  + FE T
Sbjct: 4931 GTRTFDVKVEDTTTSLFEGTVRPKFIEDDSFVPFEST 4967


>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 165 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 46
           S ++PP R  S+  W  PR RNL +   S R K  R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -3

Query: 267  SGFSEYTFGSIYYRRVRCANWPPGRY*ALRLIVCSRLIPPIRCSALNWATPRLRNLNLMH 88
            SG   +T  S+Y RR  C++W  G +     ++  R   P+   A   A  R+ N  +  
Sbjct: 1501 SGPKAHTSYSMYGRRGGCSHWTGGSWANDVYVILRRAGNPV--PAFGMANKRISNKAIRA 1558

Query: 87   SSNRDKSVRAKRS 49
            SS  D++   +R+
Sbjct: 1559 SSQWDRNHGPERA 1571


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,622,085
Number of Sequences: 59808
Number of extensions: 427238
Number of successful extensions: 1131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)