Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120819.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical ...    28   7.2  
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 96  NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 251
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++  G   L++ Y
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67


>Z77666-12|CAJ43911.2|  896|Caenorhabditis elegans Hypothetical
           protein K08E7.5c protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 236 IEPNVYSEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVT 391
           IEP+  + KP   D    +  N  G+   ++  V DYG ++ N A    N++
Sbjct: 365 IEPS--NSKPYPSDSSWSDHDNAPGSEPSYIPDVLDYGARANNHAGKMMNMS 414


>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
           protein K08E7.5a protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 236 IEPNVYSEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVT 391
           IEP+  + KP   D    +  N  G+   ++  V DYG ++ N A    N++
Sbjct: 690 IEPS--NSKPYPSDSSWSDHDNAPGSEPSYIPDVLDYGARANNHAGKMMNMS 739


>AL110501-2|CAE47474.1| 1271|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3b protein.
          Length = 1271

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 560 EKCANCANPTALXCTRKNEAAQQVLLGK 643
           ++C N AN + L C+  NE A  V+ GK
Sbjct: 198 QQCPNDANRSVLHCSTCNEVAPVVVAGK 225


>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
           protein Y79H2A.3a protein.
          Length = 2129

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 560 EKCANCANPTALXCTRKNEAAQQVLLGK 643
           ++C N AN + L C+  NE A  V+ GK
Sbjct: 198 QQCPNDANRSVLHCSTCNEVAPVVVAGK 225


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -3

Query: 525 AHNHAVTSNRNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVL 370
           +H H   S +NM +S+T+ +  I L  + M +        VP++++ +L  L
Sbjct: 215 SHYHIYVSTKNMKVSTTMKMQKIFLKALYMQIAIPAIIMVVPQIVLNVLGYL 266


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 368 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 463
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,615
Number of Sequences: 27780
Number of extensions: 316314
Number of successful extensions: 936
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)