Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120818.seq
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942           30   1.5  
04_04_1553 - 34363848-34366058,34369087-34370451                       30   1.9  
01_01_0363 + 2850954-2853675,2853819-2854225                           29   4.4  
02_05_0551 + 29907768-29907909,29907995-29909280                       28   5.9  
01_07_0195 + 41907183-41907306,41907427-41907974                       28   5.9  

>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
          Length = 1020

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +2

Query: 110 GELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLE 214
           G+L+KL  + L+Y   N ++P   F+L++LS+ L+
Sbjct: 428 GDLKKLFVLDLSYNHLNGSIPKEIFELQSLSWFLD 462


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +2

Query: 35  INELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNL 199
           I EL +L+   N  +  L   D+A G L KL+ + L+Y   N N+P++   L++L
Sbjct: 686 IPELRWLSLQENQLSGSL---DKALGNLSKLTLIDLSYNMFNGNIPDVFGKLRSL 737


>01_01_0363 + 2850954-2853675,2853819-2854225
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = +2

Query: 5   TRYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKF 184
           TR + L   +I  L  LN    Y  +         G+L+KL A+ L+    N +VP   F
Sbjct: 415 TRLSGLIPSVIGNLTNLNILAAYDAHLEGPIPATLGKLKKLFALDLSINHLNGSVPKEIF 474

Query: 185 DLKNLSFMLENTD 223
           +L +LS+ L  +D
Sbjct: 475 ELPSLSWFLILSD 487


>02_05_0551 + 29907768-29907909,29907995-29909280
          Length = 475

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 385 QCR*CLAPDFHC-RFPVACSVRSSSYSTIDCA 293
           QC+ C +P  +  R P+    RSSSYS + CA
Sbjct: 169 QCKPCPSPPCYSQRDPLFDPTRSSSYSAVPCA 200


>01_07_0195 + 41907183-41907306,41907427-41907974
          Length = 223

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 80  NKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKI 229
           NKLF++    GE+      L++++K+N N P   F +  L+  L  T  I
Sbjct: 137 NKLFTRTVCKGEVFVFPRGLVHFQKNNGNTP--AFAIAALNSQLPGTQSI 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,672
Number of Sequences: 37544
Number of extensions: 299919
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)