Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120818.seq
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26527| Best HMM Match : Filament_head (HMM E-Value=7.7)             32   0.49 
SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6)                   32   0.49 
SB_38942| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)              29   4.5  
SB_46294| Best HMM Match : zf-RanBP (HMM E-Value=0.012)                28   6.0  
SB_34632| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_26527| Best HMM Match : Filament_head (HMM E-Value=7.7)
          Length = 162

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +2

Query: 2   GTRYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKN 166
           G+R  +    +  EL+  N +VN A N L S+D+ +G+ Q+ S+  L   ++N +
Sbjct: 43  GSRAVVPASAVPEELVSQNLDVNLAVNNLLSRDEEDGDDQEESSQYLPGGEANSD 97


>SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6)
          Length = 363

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 17/55 (30%), Positives = 31/55 (56%)
 Frame = +2

Query: 2   GTRYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKN 166
           G+R  +    +  EL+  N +VN A N L S+D+ +G+ Q+ S+  L   ++N +
Sbjct: 43  GSRAVVPASAVPEELVSQNLDVNLAVNNLLSRDEEDGDDQEESSQYLPGGEANSD 97


>SB_38942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 90

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 361 DFHCRFPVACSVRSSSYSTIDCAIQTSLLSQVVHSF 254
           D++CR  +A  V ++ +  + C++  ++LSQ V  F
Sbjct: 32  DYYCRIRIASRVFNTRFVLVFCSVSKTILSQSVSRF 67


>SB_59446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 343 PVACSVRSSSYSTIDCAIQTSLLSQVVHSFYVVKLNYIDLVRVFQHKRQ 197
           P + S  SSS+S+    ++T+LLSQ   S  +  L+ I L R + +  Q
Sbjct: 341 PPSSSQTSSSFSSTTTIVKTTLLSQFSPSLLLSSLSIIYLCRHYYNHHQ 389


>SB_36597| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-07)
          Length = 346

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 113 ELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKIDIIQFD 247
           +LQK  + L   K S  +V  +K DL+ + + LE T  ++  QFD
Sbjct: 164 DLQKTKSAL---KDSQGDVQRVKRDLREMQYRLERTVSLEEEQFD 205


>SB_46294| Best HMM Match : zf-RanBP (HMM E-Value=0.012)
          Length = 81

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +3

Query: 168 CQILNS-T*KICRLCWKTRT 224
           C  LNS T KIC +C+KTRT
Sbjct: 43  CTFLNSLTVKICDMCFKTRT 62


>SB_34632| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 302 RLCDSNKFTIAGCT*FLRRQIELYRSCPCF 213
           R+ DS ++    C  +L R  E YR C C+
Sbjct: 123 RVRDSERYRDCDCERYLVRDCERYRDCECY 152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,679,477
Number of Sequences: 59808
Number of extensions: 386462
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)