Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120818.seq
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    29   3.0  
AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical ...    28   5.2  
AF067948-4|AAO25983.1|  756|Caenorhabditis elegans Egl-27 relate...    28   5.2  
AF067948-3|AAO25984.1|  870|Caenorhabditis elegans Egl-27 relate...    28   5.2  
AF067948-2|AAD34654.1|  870|Caenorhabditis elegans Egl-27 relate...    28   5.2  
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate...    28   5.2  
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    28   6.9  
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    28   6.9  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   6.9  
AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical ...    28   6.9  
AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z46812-3|CAA86846.1|  196|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +2

Query: 8   RYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFD 187
           ++  L+K+++ E L  ND V+      F+   +N +        LNY  S KN+ ++ F 
Sbjct: 269 KHEKLKKIVVAETLLENDEVDGVEIMNFATFDSNKKT-------LNYMTSKKNLDSVIFL 321

Query: 188 LKNLSFMLENTDKIDIIQ 241
           L+N   +     +I  I+
Sbjct: 322 LRNFETLFYKIQEISKIE 339


>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 47  LFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENT 220
           L L  N +  T  ++  D+    L   + + L  K+  +  PN+K+DLK L      T
Sbjct: 224 LVLLQNFDLITKSVYEMDRIFELLDGANDVNLASKRPGRRKPNLKWDLKTLKLFRNKT 281


>AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical
           protein T17A3.7 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 20  LQKMIINELLFLNDNVNYATNKL--FSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLK 193
           L+ ++++ +  +  + ++  N+L  F K   NG   +L  + +N   ++     I   LK
Sbjct: 173 LEDLLVSNISEMRIDKSFPLNQLCLFLKHWINGSNDRLEYLEMNLPANSTKTQFISIALK 232

Query: 194 NLSFMLENTDK 226
            + + L  TDK
Sbjct: 233 GIDYQLAPTDK 243


>AF067948-4|AAO25983.1|  756|Caenorhabditis elegans Egl-27 related
           protein 1, isoform c protein.
          Length = 756

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 112 RVTKTVGDVVKLQKVQQKRAKY*IRPKKFVVYAGKHGQDRYNSI*RRKNYVQPAIVNLFE 291
           RVT  VGD V         A Y IR  + +V   K G D    +  R+  +   ++ + +
Sbjct: 12  RVTYAVGDFVYFDDTSATDAPYQIRKIEELVKTEKGGVDARCVVYLRRRDIPQHLLKIAD 71

Query: 292 SHNRSLNNY 318
              R  +NY
Sbjct: 72  QAQRRFDNY 80


>AF067948-3|AAO25984.1|  870|Caenorhabditis elegans Egl-27 related
           protein 1, isoform d protein.
          Length = 870

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 112 RVTKTVGDVVKLQKVQQKRAKY*IRPKKFVVYAGKHGQDRYNSI*RRKNYVQPAIVNLFE 291
           RVT  VGD V         A Y IR  + +V   K G D    +  R+  +   ++ + +
Sbjct: 12  RVTYAVGDFVYFDDTSATDAPYQIRKIEELVKTEKGGVDARCVVYLRRRDIPQHLLKIAD 71

Query: 292 SHNRSLNNY 318
              R  +NY
Sbjct: 72  QAQRRFDNY 80


>AF067948-2|AAD34654.1|  870|Caenorhabditis elegans Egl-27 related
           protein 1, isoform b protein.
          Length = 870

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 112 RVTKTVGDVVKLQKVQQKRAKY*IRPKKFVVYAGKHGQDRYNSI*RRKNYVQPAIVNLFE 291
           RVT  VGD V         A Y IR  + +V   K G D    +  R+  +   ++ + +
Sbjct: 12  RVTYAVGDFVYFDDTSATDAPYQIRKIEELVKTEKGGVDARCVVYLRRRDIPQHLLKIAD 71

Query: 292 SHNRSLNNY 318
              R  +NY
Sbjct: 72  QAQRRFDNY 80


>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
           protein 1, isoform a protein.
          Length = 1022

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = +1

Query: 112 RVTKTVGDVVKLQKVQQKRAKY*IRPKKFVVYAGKHGQDRYNSI*RRKNYVQPAIVNLFE 291
           RVT  VGD V         A Y IR  + +V   K G D    +  R+  +   ++ + +
Sbjct: 12  RVTYAVGDFVYFDDTSATDAPYQIRKIEELVKTEKGGVDARCVVYLRRRDIPQHLLKIAD 71

Query: 292 SHNRSLNNY 318
              R  +NY
Sbjct: 72  QAQRRFDNY 80


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +2

Query: 119 QKLSAMLLNYKKSNKNVP------NIKFDLKNLSFMLENTDKIDIIQFD 247
           Q+LS +L+N  +   NV         KFDLK+ S +++N+D +  +  D
Sbjct: 67  QELSQILINEAEKYNNVKFHFNCKATKFDLKSESLIVQNSDNLSTVDGD 115


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = +2

Query: 23  QKMIINELLFLN-----DNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFD 187
           +K  +N+LL +       ++++    LF K    G +Q L  + L  +    ++ NI   
Sbjct: 184 KKCTLNDLLVMEAKDFVSSIDFEELNLFLKFWIKGFIQHLKCVELYVESDTSDLQNIAIL 243

Query: 188 LKNLSFMLENTDKI 229
            KN+S+     DK+
Sbjct: 244 FKNISYEEAPNDKV 257


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 56  NDNVNYATNKLFSKD 100
           NDN+ Y TNK+F +D
Sbjct: 930 NDNIQYGTNKIFMRD 944


>AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical
           protein K05F6.4 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 188 LKNLSFMLENTDKIDIIQFDDVKTMYN 268
           LKN  F +EN+D+I+I    DVK+  N
Sbjct: 144 LKNGEFCVENSDRIEIKLLVDVKSWLN 170


>AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical
           protein Y73B3A.4 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +2

Query: 83  KLFSKDQANGELQKLSAMLLNYKKSNKNVP-NIKFDLKNLSFMLEN 217
           K  SKD+A+ +++KLS M ++  K +   P  + FD K+ S+ + N
Sbjct: 212 KHLSKDRAHLKMKKLSKMPVDSAKLDLTYPLGVTFDTKSDSWYITN 257


>Z46812-3|CAA86846.1|  196|Caenorhabditis elegans Hypothetical
           protein ZK675.4 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 572 HNLSVVYHYWKIIPNEFYQXKLPNLRLQFT 661
           +N+     YW I  N F Q    N + QFT
Sbjct: 159 NNIGATRFYWNIAENTFLQKMTMNYKAQFT 188


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 311 ITTRPN*TRYWKTAMKIWCQTSPTLIT 391
           +TTRP  T  W+T  +I   T PT  T
Sbjct: 365 LTTRPVTTTTWRTTRRITTTTKPTTTT 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,813,248
Number of Sequences: 27780
Number of extensions: 300005
Number of successful extensions: 821
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)