Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120818.seq
(669 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 25 0.65
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.0
EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein. 21 8.0
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 21 8.0
AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein. 21 8.0
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 25.0 bits (52), Expect = 0.65
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 119 QKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKIDIIQFDDVKTMYN 268
QK+ + L YKK + + + F N DK+ FD T+ N
Sbjct: 425 QKILSYFLRYKKLQPQYSQSELQMPGVKFESVNIDKL-YTYFDKCDTLIN 473
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.4 bits (48), Expect = 2.0
Identities = 9/43 (20%), Positives = 25/43 (58%)
Frame = +3
Query: 486 RHMRFDRFFFNYIMNILNMIKTNQGIPGLTICRWYTIIGKLSQ 614
+++ ++ ++++++ L + + IPG I W+T G +S+
Sbjct: 518 KYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGTISE 560
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.4 bits (48), Expect = 2.0
Identities = 9/43 (20%), Positives = 25/43 (58%)
Frame = +3
Query: 486 RHMRFDRFFFNYIMNILNMIKTNQGIPGLTICRWYTIIGKLSQ 614
+++ ++ ++++++ L + + IPG I W+T G +S+
Sbjct: 571 KYLTYEYPWWSHVLGWLCGLSSMLCIPGYMIYIWFTTSGTISE 613
>EF032397-1|ABM97933.1| 200|Apis mellifera arginine kinase protein.
Length = 200
Score = 21.4 bits (43), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 52 KQQFIDDHFL*KRVPR 5
+Q+ IDDHFL K R
Sbjct: 161 QQKLIDDHFLFKEGDR 176
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.4 bits (43), Expect = 8.0
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 605 FSNNGIPPTDC 573
F GIPPT C
Sbjct: 139 FDQTGIPPTTC 149
>AF023619-1|AAC39040.1| 355|Apis mellifera arginine kinase protein.
Length = 355
Score = 21.4 bits (43), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 52 KQQFIDDHFL*KRVPR 5
+Q+ IDDHFL K R
Sbjct: 177 QQKLIDDHFLFKEGDR 192
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,083
Number of Sequences: 438
Number of extensions: 3642
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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