Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120818.seq
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR...    33   0.13 
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    28   4.9  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    28   4.9  
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila...    28   4.9  

>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1170

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 59  DNVNYATNKLFSKDQANGELQKLSAMLLNYKKSN 160
           D++ + TN  F  D A G L KLS   LNY K N
Sbjct: 416 DSLLWFTNHAFGLDDAQGNLVKLSKHFLNYAKGN 449


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 32  IINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKN 196
           I+N  +  N+N N +   L S ++   E++K+S++  + K   K + N   D+++
Sbjct: 605 IVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVRS 659


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 32  IINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKN 196
           I+N  +  N+N N +   L S ++   E++K+S++  + K   K + N   D+++
Sbjct: 673 IVNVEVSNNNNENQSVKNLKSDEEIMSEIRKISSVDESVKFVEKQIENAAVDVRS 727


>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
           to vacuolar proton ATPase 100-kDa subunit from
           Dictyostelium discoideum P|1384136|gb|AAB49621
          Length = 821

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 335 RYWKTAMKIWCQTSPTLITLNC 400
           +++K+A+ IW Q  P +I LNC
Sbjct: 571 KFFKSAVNIWFQFVPQMIFLNC 592


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,531,342
Number of Sequences: 28952
Number of extensions: 258993
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)