Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120816.seq
(533 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 105 3e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 8e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 95 2e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 4e-15
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.11
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.26
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.4
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 1.4
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 29 1.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 5.5
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 27 7.3
SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36) 27 9.6
SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013) 27 9.6
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 27 9.6
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 105 bits (251), Expect = 3e-23
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHA+L + V QLIV +NK+
Sbjct: 61 TREHAILVRSLGVTQLIVAINKL 83
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 8e-21
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 187
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 95.5 bits (227), Expect = 2e-20
Identities = 41/83 (49%), Positives = 59/83 (71%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHA+LA T VK L++ VNKM
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKM 292
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +2
Query: 125 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 4e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 362
IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 185 MGKGSFKYAWVLDKLKAERE 244
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 252 HIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
HI L K + + +T ID PGH F G + D VL+VAA G
Sbjct: 64 HIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 1.4
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 56 THINIVVIGHVDSGKSTTTGHLIY 127
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTXCVKQLI 485
+D PGH + M+ G + D A+L++A QT EH +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 486 VGVNKM 503
+ NK+
Sbjct: 123 ILQNKI 128
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 163
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +3
Query: 261 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 392
I + + + +D PGH F G D +++VAA
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 440
+T++D PGH IK +I G A +I GT E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 38 KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYA 211
K+ + + NI V+GHVDSGK++ L DK + ++G SF+ A
Sbjct: 28 KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87
>SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)
Length = 255
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 377 HSAISLRGSCDHVLDEISVSR--SINDGNIVLASFELPESNIDVIPTHAQPLV 225
++ IS+R + V D + SIN G+I S P + +IP+H P++
Sbjct: 123 NNVISVRKTDMDVFDALDTDANLSINSGSIKSVSGSPPGTYGQIIPSHVTPVI 175
>SB_9892| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0013)
Length = 663
Score = 27.1 bits (57), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 158 EKFEKEAQEMGKGSFKYAWVLDKLKAERES 247
+++ K +EM + K W +KLKAE E+
Sbjct: 42 KEYSKLKEEMNSDAVKVKWAQNKLKAELEA 71
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = -1
Query: 374 SAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDVIPTHAQPLVCPIPKHI 204
++++ G+ + + S N G + +F PES D+ H +P++ P+P+ I
Sbjct: 1897 ASVAGAGTSPFISSDGSAKPFANAGAKLFEAFGSPESGQDIEEPHFEPII-PLPEKI 1952
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 62 INIVVIGHVDSGKSTTTGHLIY 127
+ + V+G+VD+GKST G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,619
Number of Sequences: 59808
Number of extensions: 324311
Number of successful extensions: 807
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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