Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120816.seq
(533 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 157 6e-39
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 157 6e-39
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 149 2e-36
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 1e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 139 1e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 105 2e-23
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 98 4e-21
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 63 1e-10
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 63 1e-10
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 60 1e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 60 1e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 60 1e-09
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 41 6e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 36 0.014
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.056
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 34 0.074
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.17
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.17
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.17
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.17
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.17
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.52
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.52
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 31 0.69
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 1.2
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.6
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.6
AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 29 2.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 6.4
AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical ... 27 6.4
AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical ... 27 8.5
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 157 bits (380), Expect = 6e-39
Identities = 74/83 (89%), Positives = 77/83 (92%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHALLA T VKQLIV NKM
Sbjct: 133 TREHALLAQTLGVKQLIVACNKM 155
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 157 bits (380), Expect = 6e-39
Identities = 74/83 (89%), Positives = 77/83 (92%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHALLA T VKQLIV NKM
Sbjct: 133 TREHALLAQTLGVKQLIVACNKM 155
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 149 bits (360), Expect = 2e-36
Identities = 69/77 (89%), Positives = 73/77 (94%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQ
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 435 TREHALLAFTXCVKQLI 485
TREHALLA T VKQL+
Sbjct: 133 TREHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 96.3 bits (229), Expect = 1e-20
Identities = 42/45 (93%), Positives = 45/45 (100%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 389
IDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 139 bits (336), Expect = 1e-33
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERES 247
DKLK + +
Sbjct: 61 DKLKVTKSA 69
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 105 bits (252), Expect = 2e-23
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
T+EHALL + V QLIV VNK+
Sbjct: 296 TKEHALLLRSLGVTQLIVAVNKL 318
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 229
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 230 KAERE 244
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 105 bits (252), Expect = 2e-23
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQ
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
T+EHALL + V QLIV VNK+
Sbjct: 314 TKEHALLLRSLGVTQLIVAVNKL 336
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 229
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 230 KAERE 244
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 97.9 bits (233), Expect = 4e-21
Identities = 43/83 (51%), Positives = 59/83 (71%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQ
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREH++L T VK L++ VNKM
Sbjct: 235 TREHSMLVKTAGVKHLVILVNKM 257
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 44 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 223
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 224 KLKAERE 244
ERE
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 62.9 bits (146), Expect = 1e-10
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 435 TREHALLAFTXCVKQLIVGVNK 500
T+EH +LA VK + + +NK
Sbjct: 149 TKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTT 112
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 62.9 bits (146), Expect = 1e-10
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G E Q
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------Q 148
Query: 435 TREHALLAFTXCVKQLIVGVNK 500
T+EH +LA VK + + +NK
Sbjct: 149 TKEHLILAKQVGVKNMAIFINK 170
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTT 112
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +3
Query: 234 LSVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 413
++++ +H++ +ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 98 ITINAFHLE-----YETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP- 151
Query: 414 GISKNGQTREHALLAFTXCV--KQLIVGVNKM 503
QTREH LLA V ++V +NK+
Sbjct: 152 ------QTREHLLLARQVGVPLDNIVVFMNKV 177
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +3
Query: 234 LSVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 413
++++ +H++ +ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLE-----YETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP- 152
Query: 414 GISKNGQTREHALLAFTXCV--KQLIVGVNKM 503
QTREH LLA V ++V +NK+
Sbjct: 153 ------QTREHLLLARQVGVPLDNIVVFMNKV 178
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 60.1 bits (139), Expect = 1e-09
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Frame = +3
Query: 234 LSVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 413
++++ +H++ +ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 99 ITINAFHLE-----YETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP- 152
Query: 414 GISKNGQTREHALLAFTXCV--KQLIVGVNKM 503
QTREH LLA V ++V +NK+
Sbjct: 153 ------QTREHLLLARQVGVPLDNIVVFMNKV 178
Score = 36.3 bits (80), Expect = 0.014
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 40.7 bits (91), Expect = 6e-04
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTXCVK 476
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA C
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 477 QLIVGVNK 500
++I+ +NK
Sbjct: 127 RVIIVLNK 134
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 62 INIVVIGHVDSGKSTTT 112
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 36.3 bits (80), Expect = 0.014
Identities = 27/69 (39%), Positives = 32/69 (46%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTXCVK 476
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 477 QLIVGVNKM 503
QL+V VNK+
Sbjct: 258 QLVVAVNKI 266
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.056
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 33.9 bits (74), Expect = 0.074
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTXC 470
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 471 VKQLIVGVNKMVFTGTTIQ 527
+ Q+I +NK+ G I+
Sbjct: 155 I-QIIPVINKIDLPGADIK 172
Score = 32.3 bits (70), Expect = 0.23
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 181
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGID 145
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 27.1 bits (57), Expect = 8.5
Identities = 24/75 (32%), Positives = 30/75 (40%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTXCVK 476
+ IID PGH DF + D AVL++ G G G+ T L +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 477 QLIVGVNKMVFTGTT 521
I VNKM G T
Sbjct: 166 PFICFVNKMDRNGAT 180
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +3
Query: 237 SVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 416
S+ + I + Y + IID PGH +F M AD V++V A E
Sbjct: 183 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDA----HEGV 238
Query: 417 ISKNGQTREHAL---LAFTXCVKQL 482
+ + HA+ LA T C+ ++
Sbjct: 239 MMNTERAIRHAIQERLAVTLCISKI 263
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.17
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 32.7 bits (71), Expect = 0.17
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +3
Query: 237 SVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 416
S+ + I + Y + IID PGH +F M AD V++V A E
Sbjct: 58 SIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDA----HEGV 113
Query: 417 ISKNGQTREHAL---LAFTXCVKQL 482
+ + HA+ LA T C+ ++
Sbjct: 114 MMNTERAIRHAIQERLAVTLCISKI 138
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -2
Query: 499 LFTPTMSCLTXXVKASKACSRV*PFLEIPASNSPVPAATMSTA 371
LF PT+SC+ AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 17 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 127
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 17 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 127
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 30.7 bits (66), Expect = 0.69
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 294 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 389
+V+ +D PGH + M+ G + D A L+VA
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVA 159
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 143 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 143 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical
protein Y105C5A.1 protein.
Length = 767
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = -3
Query: 279 RTSREQYRCDTDSRSAFSLSNTQAYLKD 196
R R +RC+T+ +S+FS+ + Y ++
Sbjct: 648 RMGRSSWRCETEGKSSFSIQERKDYFRE 675
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 62 INIVVIGHVDSGKSTTT 112
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 297 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 392
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 189 VKDPSNMLGYWTN*RLSVSRYHIDIALWKFETSKYYV--TIIDAPGHRDFIK 338
V DP+ + G WT + S H ++ KF + V T++DA G +K
Sbjct: 342 VYDPTKLAGEWTQDPETKSWSHSEVEFNKFNPERPLVLDTVLDAIGKTPLVK 393
>Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 189 VKDPSNMLGYWTN*RLSVSRYHIDIALWKFETSKYYV--TIIDAPGHRDFIK 338
V DP+ + G WT + S H ++ KF + V T++DA G +K
Sbjct: 342 VYDPTKLAGEWTQDPETKSWSHSEVEFNKFNPERPLVLDTVLDAIGKTPLVK 393
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AC084152-1|AAM69074.2| 332|Caenorhabditis elegans Hypothetical
protein Y102A11A.9 protein.
Length = 332
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 140 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERESVSHRYCSLEVRN 283
+DK ++ KE E+ K KYA KLK + + V + Y S+ +N
Sbjct: 188 LDKSRVKTASKERNELAK---KYAEQNAKLKLKLKEVKNNYASMLEKN 232
>AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical
protein Y55D5A.6 protein.
Length = 284
Score = 27.1 bits (57), Expect = 8.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -1
Query: 332 EISVSRSINDGNIVLASFELPESNIDVIPTHAQPL 228
EI + I + ++L +F+LP+ ++ ++P + L
Sbjct: 38 EIGIENLIQEHELILGNFQLPKISMHILPAGEESL 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,957,103
Number of Sequences: 27780
Number of extensions: 241227
Number of successful extensions: 777
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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