Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120816.seq
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 144 3e-35
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 144 3e-35
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 144 3e-35
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 144 3e-35
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 92 2e-19
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 87 5e-18
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 61 4e-10
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 59 2e-09
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 36 0.017
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 36 0.017
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 34 0.052
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 34 0.052
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 34 0.069
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 33 0.091
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.12
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.16
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.16
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.16
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 31 0.37
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 31 0.37
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.64
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.1
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.1
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.1
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.5
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.5
At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family... 28 3.4
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 28 4.5
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 4.5
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 27 5.9
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 144 bits (349), Expect = 3e-35
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHALLAFT VKQ+I NKM
Sbjct: 133 TREHALLAFTLGVKQMICCCNKM 155
Score = 130 bits (313), Expect = 8e-31
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (349), Expect = 3e-35
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHALLAFT VKQ+I NKM
Sbjct: 133 TREHALLAFTLGVKQMICCCNKM 155
Score = 130 bits (313), Expect = 8e-31
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (349), Expect = 3e-35
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHALLAFT VKQ+I NKM
Sbjct: 133 TREHALLAFTLGVKQMICCCNKM 155
Score = 130 bits (313), Expect = 8e-31
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (349), Expect = 3e-35
Identities = 68/83 (81%), Positives = 74/83 (89%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREHALLAFT VKQ+I NKM
Sbjct: 133 TREHALLAFTLGVKQMICCCNKM 155
Score = 130 bits (313), Expect = 8e-31
Identities = 61/68 (89%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERE 244
DKLKAERE
Sbjct: 61 DKLKAERE 68
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 92.3 bits (219), Expect = 2e-19
Identities = 43/83 (51%), Positives = 56/83 (67%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G + GQ
Sbjct: 167 VEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQ 226
Query: 435 TREHALLAFTXCVKQLIVGVNKM 503
TREH LA T V +LIV VNKM
Sbjct: 227 TREHVQLAKTLGVSKLIVVVNKM 249
Score = 68.1 bits (159), Expect = 3e-12
Identities = 28/64 (43%), Positives = 46/64 (71%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 229
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 230 KAER 241
+ ER
Sbjct: 158 EEER 161
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 87.4 bits (207), Expect = 5e-18
Identities = 39/86 (45%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +3
Query: 261 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQT 437
+A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG GQT
Sbjct: 307 VAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQT 366
Query: 438 REHALLAFTXCVKQLIVGVNKMVFTG 515
REHA + V+Q+IV +NKM G
Sbjct: 367 REHARVLRGFGVEQVIVAINKMDIVG 392
Score = 77.4 bits (182), Expect = 6e-15
Identities = 32/63 (50%), Positives = 46/63 (73%)
Frame = +2
Query: 56 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 235
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 236 ERE 244
ERE
Sbjct: 298 ERE 300
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 61.3 bits (142), Expect = 4e-10
Identities = 32/82 (39%), Positives = 47/82 (57%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+ G Q
Sbjct: 130 INTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------Q 182
Query: 435 TREHALLAFTXCVKQLIVGVNK 500
T+EH LLA V ++V +NK
Sbjct: 183 TKEHILLAKQVGVPDMVVFLNK 204
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 38 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 172
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 58.8 bits (136), Expect = 2e-09
Identities = 30/77 (38%), Positives = 45/77 (58%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + +D PGH D++KNMITG +Q D +L+V+ G QT+EH L
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHIL 176
Query: 453 LAFTXCVKQLIVGVNKM 503
LA V L+ +NK+
Sbjct: 177 LARQVGVPSLVCFLNKV 193
Score = 32.7 bits (71), Expect = 0.16
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTT 112
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 234 LSVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+S+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 190 ISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.017
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 234 LSVSRYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+S+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 190 ISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 34.3 bits (75), Expect = 0.052
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 282 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 461
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 462 TXCVKQLIVGVNKM 503
+K +I+ NK+
Sbjct: 178 MMRLKHIIILQNKI 191
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 34.3 bits (75), Expect = 0.052
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 282 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 461
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 462 TXCVKQLIVGVNKM 503
+K +I+ NK+
Sbjct: 178 MMRLKHIIILQNKI 191
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 33.9 bits (74), Expect = 0.069
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +3
Query: 276 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 443
FE SK +V+ +D PGH + M+ G + D A+L++AA QT E
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSE 165
Query: 444 HALLAFTXCVKQLIVGVNKM 503
H +K +I+ NK+
Sbjct: 166 HLAAVEIMQLKHIIILQNKI 185
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 33.5 bits (73), Expect = 0.091
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +3
Query: 294 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTXCV 473
+V+ +D PGH + M+ G + D A+LI+AA QT EH +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 474 KQLIVGVNKM 503
K +I+ NK+
Sbjct: 174 KDIIIIQNKI 183
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 279 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 29 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 148
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGG 139
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.16
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHLIYKCG 136
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 446
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 31.5 bits (68), Expect = 0.37
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 446
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 276 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 163
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 285 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCG 136
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 116
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 335 DEISVSRSINDGNIVLASFELPESNIDVIPTHAQPLV-CPIPKHI*RILYPFPGPPS 168
DE+ V+ + ++ N + LP + +P+ P V P P +I R+ +PFP P S
Sbjct: 36 DEV-VTTTTDEANNLPFPPGLPFGGVPPLPSLFPPFVPSPFPGNIPRLPFPFPFPTS 91
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 384 VAAGTGEFEAGISKNGQTREHALLAFTXCVKQLIVGVNKMVFTG 515
+AA + +++ ISK+ Q + LLA VK+L GV + + G
Sbjct: 261 LAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAG 304
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 341 VLDEISVSRSINDGNIVLASFELPESNIDVIPTHAQPLVCPIPKH 207
V + + + + I DG V A +P + V+ HA P+ P H
Sbjct: 68 VAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,313,549
Number of Sequences: 28952
Number of extensions: 226484
Number of successful extensions: 654
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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