Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120815.seq
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    80   2e-16
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 79.8 bits (188), Expect = 2e-16
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
 Frame = +2

Query: 2   VHGKIYFQQESANRPLKISGYLL-NLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHG 178
           V G + F+Q   N  + +   L+ N      GFH+H++GD +NGCTSAG HFNP  + HG
Sbjct: 14  VSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAGPHFNPEGKTHG 73

Query: 179 APDAEIRHVGDLGXIKSVGYNSLXXXXXXXXLCLYMAXIIL 301
              A +RHVGDLG ++S    ++        + L+ A  I+
Sbjct: 74  DRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSII 114



 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 22/51 (43%), Positives = 30/51 (58%)
 Frame = +1

Query: 265 DNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
           D+V+SL+G ++IIG + V+H  +DDLG      S  TGN   R   G I I
Sbjct: 102 DSVISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 98  HVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEI 196
           H   +GDT +  +S+       N+DH   D+E+
Sbjct: 296 HTSFFGDTLSNLSSSLNDKKSPNDDHAVLDSEL 328


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -3

Query: 268 CPSCFXGQRIVANRLYVAQVANMPNFSIGSAVVLIGGIKMLTGRRATVARVAIFVHVKAV 89
           CP C   ++++A++   AQV  +   + G  +     +   TG+R TV    IF+H K V
Sbjct: 25  CPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQ--SYLLKKTGQR-TVPN--IFIHQKHV 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,569
Number of Sequences: 5004
Number of extensions: 31377
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)