Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120815.seq
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 95 3e-20
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 92 2e-19
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 91 5e-19
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 89 3e-18
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 36 0.016
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.048
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884... 33 0.15
11_06_0683 + 26259129-26259968 30 1.4
01_06_0490 + 29759801-29759880,29759881-29759980,29760468-297605... 29 1.8
07_03_1740 - 29153551-29153964 27 7.3
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 95.1 bits (226), Expect = 3e-20
Identities = 42/74 (56%), Positives = 50/74 (67%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G I+F QE + P ++G + L GLHGFHVH GDT+NGC S G HFNPT ++HGA
Sbjct: 14 VKGTIFFSQEG-DGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGA 72
Query: 182 PDAEIRHVGDLGXI 223
P E RH GDLG I
Sbjct: 73 PQDENRHAGDLGNI 86
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = +1
Query: 256 NMMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
N+ D+ + L G H+IIG + VVH D DDLG H SKTTGN GR+ G I +
Sbjct: 97 NVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 92.3 bits (219), Expect = 2e-19
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G ++F Q+ + ++ G + L GLHGFH+H +GDT+NGC S G HFNP N+ HGA
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 182 PDAEIRHVGDLGXI 223
P + RHVGDLG I
Sbjct: 83 PSDDERHVGDLGNI 96
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +1
Query: 265 DNVMSLYGPHNIIGXSXVVHTDKDDLG 345
D +SL GPH+I+G + VVH D DDLG
Sbjct: 110 DLQISLSGPHSILGRAVVVHADSDDLG 136
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 91.1 bits (216), Expect = 5e-19
Identities = 38/74 (51%), Positives = 50/74 (67%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G I+F QE + P ++G + L GLHGFH+H GDT+NGC S G H+NP ++HGA
Sbjct: 132 VKGTIHFVQEG-DGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGA 190
Query: 182 PDAEIRHVGDLGXI 223
P+ E RH GDLG +
Sbjct: 191 PEDETRHAGDLGNV 204
Score = 57.6 bits (133), Expect = 6e-09
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = +1
Query: 256 NMMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
+++D+ + L GP++IIG + VVH D DDLG H SKTTGN GR+ G I +
Sbjct: 215 HVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 88.6 bits (210), Expect = 3e-18
Identities = 38/74 (51%), Positives = 48/74 (64%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G + Q+ P ++ + L GLHGFH+HE+GDT+NGC S G HFNP N HGA
Sbjct: 64 VEGVVTLTQDDQG-PTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGA 122
Query: 182 PDAEIRHVGDLGXI 223
P+ E+RH GDLG I
Sbjct: 123 PEDEVRHAGDLGNI 136
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +1
Query: 259 MMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
++D + L GP++++G + VVH +DDLG H S +TGN GRL G + +
Sbjct: 148 IVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGL 200
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 36.3 bits (80), Expect = 0.016
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 74 LPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGXIKS 229
L G HG+ ++E+GD + G S G+ +NP++ P +GDLG +++
Sbjct: 199 LSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEA 244
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.048
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 86 LHGFHVHEYGDTSNGCTSAG 145
LHGFHVH G T+NGC G
Sbjct: 50 LHGFHVHALGGTTNGCMRNG 69
>03_02_0710 +
10587969-10588069,10588181-10588262,10588362-10588414,
10588828-10589315,10589415-10589575,10589699-10589896,
10590091-10590277,10590355-10590611
Length = 508
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 23 QQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNE 169
Q +S P + +LNLP+G H F E +S C + P NE
Sbjct: 397 QSQSVQMPASENAQILNLPQGAHCFPSGELPSSSQDCLLNPLQYQPLNE 445
>11_06_0683 + 26259129-26259968
Length = 279
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 77 PRGLHGFHVHEYGDTSNGCTSAG-EHFNPTNEDHGAPDAEIRHV 205
P +G+H+H T C AG H++P+ + D +RH+
Sbjct: 224 PPPCYGYHLHYCHCTHGHCHCAGGRHYSPSYYSDDSADVRLRHM 267
>01_06_0490 +
29759801-29759880,29759881-29759980,29760468-29760574,
29761305-29761554,29761989-29762111,29762471-29762638,
29762741-29762878,29763206-29763235
Length = 331
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 59 GYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPD 187
G+ L+ RG G +VH+Y + S + GE+++ + +G D
Sbjct: 103 GWRLDFVRGFWGGYVHDYLEASEPYFAVGEYWDSLSYTYGEMD 145
>07_03_1740 - 29153551-29153964
Length = 137
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 102 CTNMATRATVARRPVSILIPPMRTTALP 185
C + A AT A PV+ + PP+ T LP
Sbjct: 94 CASYAASATAAAPPVAAVPPPVLTPPLP 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,025
Number of Sequences: 37544
Number of extensions: 225854
Number of successful extensions: 510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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