Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120815.seq
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                87   7e-18
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                48   5e-06
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.4  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         28   5.7  
SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   7.5  
SB_50059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 35/61 (57%), Positives = 43/61 (70%)
 Frame = +2

Query: 41  RPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGX 220
           +P KI+G +  L  G HGFH+H YGD +NGC SAG HFNP  ++HG P  E RHVGDLG 
Sbjct: 26  KPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDLGN 85

Query: 221 I 223
           +
Sbjct: 86  V 86



 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 27/54 (50%), Positives = 36/54 (66%)
 Frame = +1

Query: 256 NMMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
           +M D +++L G H+++G S VVH D+DDLG   H  SKTTG+  GRL  G I I
Sbjct: 97  DMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGRLACGVIGI 150


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +1

Query: 295 NIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIA 414
           +IIG + VVH D+DDLG   H  SK+TGN   R+G G IA
Sbjct: 29  DIIGRAIVVHADEDDLGRGGHELSKSTGNSGARVGCGIIA 68


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 173 HGAPDAEIRHVGDLGXIKS 229
           HGAP+ + RH+GDLG I++
Sbjct: 2   HGAPEDKDRHLGDLGNIEA 20


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
 Frame = +2

Query: 89  HGFHVHE--YGD-----TSNG-CTSAGEHFNPTNED 172
           H +HVHE   GD       +G C+S G H+NP N D
Sbjct: 387 HNWHVHEKPVGDDMTKPVDDGRCSSLGPHYNPYNVD 422


>SB_643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 39  IDRLKLAVIC*ICLEVCTAFTCTNMATRATVARRPVSILIPPMRTTA 179
           ID+L+L+V         T   CT+  T      +PV IL+   RT A
Sbjct: 396 IDQLRLSVAKTELANSRTRLLCTSQKTFTNFTEKPVKILLSDNRTIA 442


>SB_50059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 77  PRGLHGFHVHEYGDTSNGCTSAGEHFNPT 163
           PRG H  H H+    S+ C    E  NP+
Sbjct: 8   PRGYHRAHAHDTDQPSDLCQRTAEPQNPS 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,288,309
Number of Sequences: 59808
Number of extensions: 267147
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)