Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120815.seq
(543 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 98 3e-21
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 98 3e-21
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 98 3e-21
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 98 3e-21
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 91 5e-19
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 87 1e-17
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 87 1e-17
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 87 1e-17
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81536-1|CAB04365.1| 333|Caenorhabditis elegans Hypothetical pr... 27 6.6
Z75543-2|CAA99870.1| 529|Caenorhabditis elegans Hypothetical pr... 27 6.6
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 182 PDAEIRHVGDLGXIKS 229
P +EIRHVGDLG +++
Sbjct: 74 PKSEIRHVGDLGNVEA 89
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 259 MMDNVMSLYGPHNIIGXSXVVHTDKDDLG---XTEHPXSKTTGNXDGRLGXGXIAI 417
+ D +++LYGP+ ++G S VVH +DDLG + SK TGN R G IA+
Sbjct: 99 LTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 182 PDAEIRHVGDLGXIKS 229
P +EIRHVGDLG +++
Sbjct: 74 PKSEIRHVGDLGNVEA 89
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 259 MMDNVMSLYGPHNIIGXSXVVHTDKDDLG---XTEHPXSKTTGNXDGRLGXGXIAI 417
+ D +++LYGP+ ++G S VVH +DDLG + SK TGN R G IA+
Sbjct: 99 LTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 14 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 73
Query: 182 PDAEIRHVGDLGXIKS 229
P +EIRHVGDLG +++
Sbjct: 74 PKSEIRHVGDLGNVEA 89
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 259 MMDNVMSLYGPHNIIGXSXVVHTDKDDLG---XTEHPXSKTTGNXDGRLGXGXIAI 417
+ D +++LYGP+ ++G S VVH +DDLG + SK TGN R G IA+
Sbjct: 99 LTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G I+ Q+S N I G + L GLHGFHVH+YGD++NGC SAG HFNP + HG
Sbjct: 36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGG 95
Query: 182 PDAEIRHVGDLGXIKS 229
P +EIRHVGDLG +++
Sbjct: 96 PKSEIRHVGDLGNVEA 111
Score = 47.6 bits (108), Expect = 6e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 259 MMDNVMSLYGPHNIIGXSXVVHTDKDDLG---XTEHPXSKTTGNXDGRLGXGXIAI 417
+ D +++LYGP+ ++G S VVH +DDLG + SK TGN R G IA+
Sbjct: 121 LTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 91.1 bits (216), Expect = 5e-19
Identities = 35/76 (46%), Positives = 52/76 (68%)
Frame = +2
Query: 2 VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
V G ++ Q++ + G + L GLHGFH+H+YGD+++GCTSAG HFNP +HG
Sbjct: 34 VFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGG 93
Query: 182 PDAEIRHVGDLGXIKS 229
D+ +RHVGDLG +++
Sbjct: 94 RDSVVRHVGDLGNVEA 109
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +1
Query: 265 DNVMSLYGPHNIIGXSXVVHTDKDDLG---XTEHPXSKTTGNXDGRLGXGXIAI 417
D V+SL+G + +IG S VVH D+DDLG + S TGN R G IA+
Sbjct: 121 DKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGNAGARAACGVIAL 174
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +2
Query: 8 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPD 187
G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP HGAPD
Sbjct: 42 GTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99
Query: 188 AEIRHVGDLGXIKS 229
RH+GDLG I+S
Sbjct: 100 DSNRHIGDLGNIES 113
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +1
Query: 256 NMMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXI 411
++ D++ SL G ++IIG S V+H DDLG SKTTGN RL G I
Sbjct: 122 SVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +2
Query: 8 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPD 187
G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP HGAPD
Sbjct: 42 GTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99
Query: 188 AEIRHVGDLGXIKS 229
RH+GDLG I+S
Sbjct: 100 DSNRHIGDLGNIES 113
Score = 50.4 bits (115), Expect = 8e-07
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +1
Query: 256 NMMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
++ D++ SL G ++IIG S V+H DDLG SKTTGN RL G I I
Sbjct: 122 SVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGI 175
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/74 (54%), Positives = 48/74 (64%)
Frame = +2
Query: 8 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPD 187
G I F Q + LK++G + L G HGFH+HE GDT NGC SAG H+NP HGAPD
Sbjct: 42 GTIDFDQSGSF--LKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPD 99
Query: 188 AEIRHVGDLGXIKS 229
RH+GDLG I+S
Sbjct: 100 DSNRHIGDLGNIES 113
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +1
Query: 256 NMMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXI 411
++ D++ SL G ++IIG S V+H DDLG SKTTGN RL G I
Sbjct: 122 SVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTI 173
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 8 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 157
G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F+
Sbjct: 897 GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +2
Query: 8 GKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFN 157
G+ F Q ++ L+I G + LP G H +H++GD+S GC+ G F+
Sbjct: 688 GRFTFSQLTSTA-LRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736
>Z81536-1|CAB04365.1| 333|Caenorhabditis elegans Hypothetical
protein F40D4.1 protein.
Length = 333
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 326 VCTTKLXPIILXGPYKDITLSIMFXRS 246
VCTT L II+ PY++ TLSI+ +S
Sbjct: 285 VCTT-LTMIIVHTPYRNATLSILHLKS 310
>Z75543-2|CAA99870.1| 529|Caenorhabditis elegans Hypothetical
protein K01D12.2 protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/81 (20%), Positives = 33/81 (40%)
Frame = -2
Query: 422 LHMAIXPXPKRPSXLPVVLLNGCSVXPRSSLSVCTTKLXPIILXGPYKDITLSIMFXRSA 243
+H + P PV +L+ S+ P +++ T P P + ++F S+
Sbjct: 1 MHKSRSPDQVDYPPFPVSVLSTDSIVPECNINSTTQDSVPQYSYSPATHTDIPLLFIHSS 60
Query: 242 NCSQPTLCXPSRQHA*FQHRE 180
+ S+QH F H++
Sbjct: 61 YQNNQQRAHGSQQHHIFPHQQ 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,378,194
Number of Sequences: 27780
Number of extensions: 191592
Number of successful extensions: 443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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