Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120815.seq
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    26   0.29 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 465 RRIXLVKRVKAMTSFTYGNXXXSQTAVXIAGCFAXRMLGXAQIVFV 328
           + + LVK+VK +    YG+   S T V    C   + L   +I ++
Sbjct: 11  QNVVLVKKVKIVLLIFYGSIMFSMTQVNKEECDYYQNLNLGEIYYI 56


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 186 SGAPWSSLVGLKCSPADVQPLLVSPYSCT*KPCKPRG 76
           SG   S  +G+K  PA+ + L  S  S    P  P G
Sbjct: 290 SGGIRSDQMGVKIEPAEAESLSTSGSSGILTPVSPYG 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,379
Number of Sequences: 438
Number of extensions: 2322
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)