Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120815.seq
         (543 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla...    86   1e-17
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ...    86   1e-17
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z...    83   9e-17
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ...    41   6e-04
At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to SP|P1...    27   6.1  
At1g01220.1 68414.m00036 GHMP kinase-related contains similarity...    27   6.1  
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t...    27   8.1  
At1g02960.2 68414.m00265 expressed protein                             27   8.1  
At1g02960.1 68414.m00264 expressed protein                             27   8.1  

>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
           (SODCP) / copper/zinc superoxide dismutase (CSD2)
           identical to GP:3273753:AF061519
          Length = 216

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 37/76 (48%), Positives = 48/76 (63%)
 Frame = +2

Query: 2   VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
           V G +   Q+ +  P  ++  +  L  G HGFH+HE+GDT+NGC S G HFNP N  HGA
Sbjct: 77  VEGVVTLTQDDSG-PTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNNMTHGA 135

Query: 182 PDAEIRHVGDLGXIKS 229
           P+ E RH GDLG I +
Sbjct: 136 PEDECRHAGDLGNINA 151



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/53 (47%), Positives = 34/53 (64%)
 Frame = +1

Query: 259 MMDNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
           ++DN + L GP++++G + VVH  KDDLG   H  S TTGN  GRL  G I +
Sbjct: 161 IVDNQIPLTGPNSVVGRAFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGL 213


>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
           copper/zinc superoxide dismutase (CSD1) identical to
           SWISS-PROT: P24704
          Length = 152

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 40/74 (54%), Positives = 47/74 (63%)
 Frame = +2

Query: 2   VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
           V G I+F QE  +    +SG +  L  GLHGFHVH  GDT+NGC S G HFNP  + HGA
Sbjct: 14  VTGTIFFTQEG-DGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGA 72

Query: 182 PDAEIRHVGDLGXI 223
           P+   RH GDLG I
Sbjct: 73  PEDANRHAGDLGNI 86



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/51 (45%), Positives = 30/51 (58%)
 Frame = +1

Query: 265 DNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
           D  + L GP++I+G + VVH D DDLG   H  S  TGN  GR+  G I +
Sbjct: 100 DCQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVACGIIGL 150


>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
           superoxide dismutase (CSD3) identical to copper/zinc
           superoxide dismutase GI:3273755
          Length = 164

 Score = 83.4 bits (197), Expect = 9e-17
 Identities = 36/74 (48%), Positives = 46/74 (62%)
 Frame = +2

Query: 2   VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
           V G + F Q+ +     ++G +  L  G HGFH+H +GDT+NGC S G HFNP N  HG 
Sbjct: 20  VRGCLQFVQDISGTT-HVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGP 78

Query: 182 PDAEIRHVGDLGXI 223
           P+ E RH GDLG I
Sbjct: 79  PNEEERHAGDLGNI 92



 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +1

Query: 265 DNVMSLYGPHNIIGXSXVVHTDKDDLGXTEHPXSKTTGNXDGRLGXGXIAI 417
           D  + L G ++I+G + VVH D DDLG   H  SK+TGN   R+G G I +
Sbjct: 106 DKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156


>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
           putative similar to copper chaperone for superoxide
           dismutase [Homo sapiens] gi|2431868|gb|AAC51764
          Length = 254

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +2

Query: 2   VHGKIYFQQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGA 181
           + G + F Q S     +I      L  G H + ++EYGD +NG  S G  +NP  +  G 
Sbjct: 107 IFGVVRFAQVSMELA-RIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLYNPFQDQTGT 165

Query: 182 PDAEIRHVGDLGXIKS 229
                  +GDLG +++
Sbjct: 166 -----EPLGDLGTLEA 176


>At5g35840.1 68418.m04306 phytochrome C (PHYC) identical to
           SP|P14714 Phytochrome C {Arabidopsis thaliana}
          Length = 1111

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 23  QQESANRPLKISGYLLNLPRGLHGFHVHEYGDTSN 127
           Q +S ++P+ +SG  L  P G H  ++   G  ++
Sbjct: 297 QDKSLSQPISLSGSTLRAPHGCHAQYMSNMGSVAS 331


>At1g01220.1 68414.m00036 GHMP kinase-related contains similarity to
           L-fucose kinase [Homo sapiens] gi|21212956|emb|CAD29647
          Length = 1055

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 204 TCLISASGAPWSSLVGLKCSPADVQPLLV 118
           T +ISA G  WS LV L CS    QP+++
Sbjct: 273 TGIISARGRAWSDLVALGCS---CQPMIL 298


>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
           RNA Binding Protein 47 [Nicotiana plumbaginifolia]
           GI:9663769, DNA binding protein ACBF GB:AAC49850 from
           [Nicotiana tabacum]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 435

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 229 GWLQFADRKNMMDNVMSLYGPHNIIGXSXV 318
           G++QFADRK+  D + SL G   +IG + V
Sbjct: 359 GFVQFADRKSAEDAIESLNG--TVIGKNTV 386


>At1g02960.2 68414.m00265 expressed protein
          Length = 471

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 32  SANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEI 196
           S  R  K S  L +  R    F+ H +G+TS+  +   E F P  ED    +  I
Sbjct: 147 SGFRAKKSSNGLKDHGRPKFSFNSHTHGETSSKISDMAEIFEPDVEDQAIEEDPI 201


>At1g02960.1 68414.m00264 expressed protein
          Length = 462

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 32  SANRPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEI 196
           S  R  K S  L +  R    F+ H +G+TS+  +   E F P  ED    +  I
Sbjct: 147 SGFRAKKSSNGLKDHGRPKFSFNSHTHGETSSKISDMAEIFEPDVEDQAIEEDPI 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,668,108
Number of Sequences: 28952
Number of extensions: 174027
Number of successful extensions: 373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)