Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120812.seq
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    29   0.59 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   1.8  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   1.8  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   3.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   3.1  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   3.1  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   4.1  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    26   5.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.5  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    25   7.2  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   7.2  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   7.2  
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    25   7.2  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   9.5  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 375 QLVFPFVQTIQISQSTKFVFQKSAFETTTIQY*KVASFHIIAICSCH 235
           + V PFV T+  S + +  F+   FE   + Y    ++H  AI  C+
Sbjct: 78  ECVAPFVWTLSSSSNERESFENLIFEHACLIYRLACTYHTTAISLCN 124


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 452 TLGPMVYVVLPLAGSNTTIFLSGSGY 375
           T+   V VVLP AG+NT   +SGS +
Sbjct: 290 TVSGTVEVVLPTAGTNTMTVVSGSRF 315



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 452 TLGPMVYVVLPLAGSNTTIFLSGSGY 375
           T+   V VVLP AG+NT   +SGS +
Sbjct: 430 TVSGTVEVVLPTAGTNTMTVVSGSRF 455


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 29  ATKRKIGDSSSDDNQPKRERVES 97
           A+KRKI  SSSDD++ K E   S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 407 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 318
           NT ++ +G G ++ +H  +LFK   R   F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 459 QALRILVFRLWNHKTCQSNFGQFFSIQYGDIHKH 560
           Q L IL+ +LWNHK  +S+      IQ   +  H
Sbjct: 219 QRLAILIRKLWNHKAFKSHVSPQELIQEVTVLSH 252


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 437 VYVVLPLAGSNTTIFLSGSGYNLSS 363
           V VV+P AG  TT   SGS Y +S+
Sbjct: 173 VEVVIPTAGYITTTLTSGSSYPVST 197


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 437 VYVVLPLAGSNTTIFLSGSGYNLSS 363
           V VV+P AG+ TT   SGS Y +++
Sbjct: 130 VEVVIPTAGTFTTTLTSGSSYPVAT 154


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 33  LNARLAIRAATTTSQSGKEWK 95
           LNA L +RA    S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 510 SNFGQFFSIQYGDIHKHNNIFGQHFAKTLAKRFSFENGNQTCAFIA 647
           +N+    S+ +  ++ + N+     A +LA  ++FE   QT AF+A
Sbjct: 227 ANYPTILSVMHSVVNAYKNLV----AVSLATEYTFEGTEQTKAFLA 268


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 374  NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 273
            N   + C+   +   +NSFFKNL S    +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 531 SIQYGDIHKHNNIFGQHFAKTLAKR 605
           +I  GD+ + NN  G H A T+A R
Sbjct: 240 TIPSGDVDEDNNGHGTHVAGTIASR 264


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 122 YNNNNGAAFNVKHDETG--VMCYFTPSSVQLE 211
           ++NN+    N+KH E G  +  Y TP   +LE
Sbjct: 61  FHNNHSVILNIKHPELGEPLKPYQTPLPPELE 92


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 250 HLLLPQHLCQLAWLQLNGRRR 188
           H+++PQ   Q +W+  +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -1

Query: 479 NQNPQGLPCTLGPMVYVVLPLAGSNTTIFL--SGSGYNLSSHSCKLFKLASRQNS--FFK 312
           N +  G P +L  +     PLA S T+  L  S S  NL      LF+  + +N+  +F 
Sbjct: 203 NNSSSGFPSSLNGIPIASPPLATSPTSFSLASSASSTNLGGSKGLLFQQMTSENNRDYFS 262

Query: 311 NLPS 300
             P+
Sbjct: 263 RRPT 266


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -2

Query: 652 YPAMNAHVWFPFSKENRFASVF--AKCCPNILLCL 554
           YP+     WF    E    SVF  +  C  ++LCL
Sbjct: 234 YPSFLRSWWFAIKSEGELGSVFLISLICSVLVLCL 268


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 529 LAFNTETFTNTTIYLGNILQRHLQSDFPLKMGTKRVHSL 645
           L +++ +F N T+ L N     +  D+P  M   R+HSL
Sbjct: 364 LDYSSPSFLNNTLSLMNANSITILQDYPEYMLKLRLHSL 402


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 379  DTTCLPIRANYSN*PVDKIRFSKICLRNNYNSVLKSC 269
            DT  L    N+S   + ++ F++  LRN    +L  C
Sbjct: 1226 DTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDEC 1262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,545
Number of Sequences: 5004
Number of extensions: 64980
Number of successful extensions: 219
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)