Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120812.seq
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0791 + 11222291-11224237                                         29   3.2  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   4.3  
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801...    29   4.3  
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307...    28   7.5  
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419...    28   7.5  
03_05_0350 + 23368111-23368219,23368519-23368526,23368650-233686...    27   9.9  

>03_02_0791 + 11222291-11224237
          Length = 648

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 576 AQIYCCVCECLRIEC*KTGQSCFGTFYGSKVGKPKSAGLAL-HSWTDGVRSLAVGRL 409
           A + C V  C R+E  + G+ C G  + + +G   +   AL H ++  +  +A  RL
Sbjct: 267 AVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYSSFLNVVAARRL 323


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = +1

Query: 304 GRFLKNEFCRLANLNSLHEWEDKLYPEPD--KNIVVLEPANG---KTTYTIGPRVQGKP 465
           GR L        + + L  W   LY   D    + +LE A G   K  ++IGP +Q KP
Sbjct: 342 GRILSRSHSIALSSSCLSTWHHLLYKLGDLINQLPILEAAFGPVLKIVFSIGPDIQNKP 400


>04_04_1639 +
           34978498-34978585,34979049-34979343,34980070-34980107,
           34980655-34980788,34980868-34980973,34981451-34981536,
           34981962-34982150,34982477-34982641,34982898-34982921,
           34983235-34983348,34983605-34983850
          Length = 494

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 253 DNVKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEP 414
           D ++  NF++L  SC EG+F   E   L  L S  LH +E +  P     +  L P
Sbjct: 252 DLIRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAP 306


>09_04_0706 +
           19627024-19627380,19629945-19629976,19630657-19630751,
           19632116-19632281,19632881-19632938,19633014-19633061,
           19633274-19633464,19633580-19633702,19635174-19635289,
           19635841-19635924,19636009-19636259,19636438-19636647
          Length = 576

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 190 AVVRSIGATRVDKDVVAGANGDNVKRGNFSILNCSCFEGRFLKNEFCRLANLNSLHEW 363
           A +  I ++R    V A A+   V R +   L   CF+   +  +FC   NLN+L+++
Sbjct: 97  AYLEGIDSSRWATAVAAAASMGTVSRLSLKHL-LRCFDFYSIDRKFCNGTNLNTLYQY 153


>09_03_0111 -
           12440818-12441129,12441242-12441585,12441663-12441989,
           12443444-12443602,12443687-12443784,12444745-12444821
          Length = 438

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 286 NCSCFEGRFLKNEFC 330
           +CSC+ G ++KN FC
Sbjct: 83  DCSCYPGSYMKNGFC 97


>03_05_0350 +
           23368111-23368219,23368519-23368526,23368650-23368658,
           23368768-23368839,23368978-23369097,23369638-23370058,
           23370131-23370285,23370461-23370625,23370822-23370825,
           23371739-23371799,23371933-23372035,23372422-23372854,
           23372978-23373120,23373608-23373740,23375567-23375576,
           23375852-23375975,23376595-23377012,23377153-23377343,
           23377569-23377811
          Length = 973

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 441 RSKSAGQALRILVFRLWNHKTCQSNFGQFFSIQYGDIHKHNNI---FGQHFAKTLAKRFS 611
           + K  GQ +R L  R    +  Q  +  FF +  GD HK   I   F +HF   ++K   
Sbjct: 372 KMKKCGQKMRKLNTRS-TARDDQEKY--FFKVMIGDFHKRMTIPDKFARHFKGVISKTIK 428

Query: 612 FE 617
            E
Sbjct: 429 LE 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,266,548
Number of Sequences: 37544
Number of extensions: 425439
Number of successful extensions: 1355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)