Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120812.seq
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75554-4|CAA99957.2| 534|Caenorhabditis elegans Hypothetical pr... 32 0.41
L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline acetylt... 32 0.41
L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline acetylt... 32 0.41
AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal chol... 32 0.41
U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 29 2.9
L14710-4|AAK84537.3| 526|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 28 6.7
Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical p... 27 8.8
>Z75554-4|CAA99957.2| 534|Caenorhabditis elegans Hypothetical
protein ZC455.6a protein.
Length = 534
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 489 WNHKTCQSNFGQFFSIQYGDIHKHNNIFGQHFAKTLAK-RFSFENGNQTCAFI 644
W+ S FG+ F QY D+++ N +H+ + L + F N N F+
Sbjct: 214 WHKILSSSTFGELFDRQYADVYRLTNGKARHWKQILNDVTYHFSNSNPYLDFV 266
>L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 383 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLSPFAPATTSL 225
SGY + +H C LF LA R+ + +++PS L ++ RF LS + TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPLST-SQVTTSL 564
>L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 383 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLSPFAPATTSL 225
SGY + +H C LF LA R+ + +++PS L ++ RF LS + TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPLST-SQVTTSL 564
>AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal choline
acetyltransferaseprotein 1, isoform b protein.
Length = 627
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -1
Query: 383 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTLSPFAPATTSL 225
SGY + +H C LF LA R+ + +++PS L ++ RF LS + TTSL
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPLST-SQVTTSL 564
>U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical
protein T05E8.1 protein.
Length = 893
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 35 KRKIGDSSSDDNQPKRERVESGEDQQ 112
K K GDSSSDD+ P+R+R E D +
Sbjct: 13 KFKRGDSSSDDSGPERDRDEDDSDNE 38
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 439 IGPRVQGKPCGFWFSDFGTIKRAKATLASFLAFNTETFT 555
+GPR QG G F+ FG++ R A L + FN+ +T
Sbjct: 403 LGPRQQGTMQGV-FAFFGSVGRCAAPLVTTFFFNSSGYT 440
>L14710-4|AAK84537.3| 526|Caenorhabditis elegans Hypothetical
protein K02D10.1a protein.
Length = 526
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +1
Query: 358 EWEDKLYPEPDKNIVVLEPANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKATLASFLAF 537
EW + L +P K + VL + KT +++ GF + LA +L
Sbjct: 38 EWINLLLEDPSKKVFVLTNNSTKTLEQYMKKIE--KLGFGHLGRNNVISPAIVLADYLKS 95
Query: 538 NTETFTNTTIYL 573
N + F+ +YL
Sbjct: 96 NADKFSGEYVYL 107
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Frame = -1
Query: 371 LSSHSCKLFKLASRQNSF---------FKNLPSKQLQFSIEKLPRFTLS-PFAPATTSLS 222
L+SHSCK+F++ + SF + +P + + S +P LS P P T SL
Sbjct: 11 LNSHSCKIFQICTSSQSFDLELFNSSLYNLVPIRFVPISTLLVPPIRLSRPAFPLTISLI 70
Query: 221 TRVAP 207
V P
Sbjct: 71 HSVHP 75
>Z73972-9|CAB60280.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 622 PFSKENRFASVFAKCCPNILLCL*MSPY*MLKNWPKLLW 506
P + F KC +LL M+P ML NWP ++
Sbjct: 103 PLHDAEAIMNEFNKCASMLLLRFSMNPQGMLFNWPYTIY 141
>Z71177-10|CAB60279.2| 353|Caenorhabditis elegans Hypothetical
protein F15H10.8 protein.
Length = 353
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 622 PFSKENRFASVFAKCCPNILLCL*MSPY*MLKNWPKLLW 506
P + F KC +LL M+P ML NWP ++
Sbjct: 103 PLHDAEAIMNEFNKCASMLLLRFSMNPQGMLFNWPYTIY 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,455
Number of Sequences: 27780
Number of extensions: 375956
Number of successful extensions: 1184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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