Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120811.seq
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    50   5e-08
AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.    47   6e-07
AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.    47   6e-07
AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.    47   6e-07
AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.    47   6e-07
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    24   0.30 
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          24   4.8  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 50.4 bits (115), Expect = 5e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +3

Query: 87  MRECISVHVGQAGVQIGNACWE 152
           MRECISVHVGQAGVQIGN CW+
Sbjct: 1   MRECISVHVGQAGVQIGNPCWD 22



 Score = 33.5 bits (73), Expect = 0.006
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +1

Query: 142 PAGSFTAWSTASSLMARCPQTRPSGVETILSTLSSARPSWQARTP 276
           P    T WS AS+   RCP+TR S      ST SS R +  +  P
Sbjct: 19  PCWDCTVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTCP 63


>AY334011-1|AAR01136.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 46.8 bits (106), Expect = 6e-07
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +2

Query: 404 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARS 577
           HYT G E+VD VLD +RK  + C  LQGF + HS        +G+L     +      R 
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLI-SKIREEYPDRI 59

Query: 578 LNWSSPSTPRLRFSTAVVEPYNSIL 652
           +N  S   P  + S  VVEPYN+ L
Sbjct: 60  MNTYS-VVPSPKVSDTVVEPYNATL 83


>AY334010-1|AAR01135.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 46.8 bits (106), Expect = 6e-07
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +2

Query: 404 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARS 577
           HYT G E+VD VLD +RK  + C  LQGF + HS        +G+L     +      R 
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLI-SKIREEYPDRI 59

Query: 578 LNWSSPSTPRLRFSTAVVEPYNSIL 652
           +N  S   P  + S  VVEPYN+ L
Sbjct: 60  MNTYS-VVPSPKVSDTVVEPYNATL 83


>AY334009-1|AAR01134.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 46.8 bits (106), Expect = 6e-07
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +2

Query: 404 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARS 577
           HYT G E+VD VLD +RK  + C  LQGF + HS        +G+L     +      R 
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLI-SKIREEYPDRI 59

Query: 578 LNWSSPSTPRLRFSTAVVEPYNSIL 652
           +N  S   P  + S  VVEPYN+ L
Sbjct: 60  MNTYS-VVPSPKVSDTVVEPYNATL 83


>AY334008-1|AAR01133.1|  188|Anopheles gambiae beta-tubulin protein.
          Length = 188

 Score = 46.8 bits (106), Expect = 6e-07
 Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +2

Query: 404 HYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARS 577
           HYT G E+VD VLD +RK  + C  LQGF + HS        +G+L     +      R 
Sbjct: 1   HYTEGAELVDAVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLI-SKIREEYPDRI 59

Query: 578 LNWSSPSTPRLRFSTAVVEPYNSIL 652
           +N  S   P  + S  VVEPYN+ L
Sbjct: 60  MNTYS-VVPSPKVSDTVVEPYNATL 83


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 24.2 bits (50), Expect(2) = 0.30
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 193 CPQTRPSGVETILSTLSSARPSWQARTPCCLR 288
           C   RPS ++   ++ S  RP   A +  C R
Sbjct: 164 CGSARPSRIDVAFASPSICRPDLAANSATCWR 195



 Score = 21.8 bits (44), Expect(2) = 0.30
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 136 VMPAGSFTAWSTASSLMARCPQTRPSGV 219
           V+ AG F AW TA        +T+P G+
Sbjct: 116 VLLAGDFNAWHTAWG----SERTKPKGI 139


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +3

Query: 204  KTIGGGDDSFNTFFSETE 257
            +TIG  ++SF+++ SETE
Sbjct: 1082 QTIGAREESFSSYRSETE 1099


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,855
Number of Sequences: 2352
Number of extensions: 15165
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)