Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120811.seq
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 242 LQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 343
           L+  RA  H+    + D+EPTV         RQL
Sbjct: 234 LEERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 150 PSRHYRSGLR 121
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 213 RWSCLWASGHQAGCRAPGSKAPSRHYR 133
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 213 RWSCLWASGHQAGCRAPGSKAPSRHYR 133
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 213 RWSCLWASGHQAGCRAPGSKAPSRHYR 133
           RW C W+ G    C+A    A SR  R
Sbjct: 387 RW-CTWSEGDLEKCKALTRAAYSRDVR 412


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 587  SSLDFLP*STERRSINKEVNPEPVPPRRSGRS 492
            SS+D    + ER +  ++  P P PP  SG++
Sbjct: 1336 SSIDSDYSTLERTAWRQQQPPPPPPPPSSGQA 1367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,143
Number of Sequences: 438
Number of extensions: 4444
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)