Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120811.seq
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 179 2e-45
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 179 2e-45
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 178 2e-45
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 178 2e-45
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 178 2e-45
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 178 2e-45
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 170 6e-43
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 106 1e-23
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 104 4e-23
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 103 8e-23
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 103 1e-22
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 103 1e-22
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 102 2e-22
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 101 5e-22
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 101 5e-22
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 98 4e-21
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 71 9e-13
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 70 1e-12
At3g10650.1 68416.m01281 expressed protein 29 2.7
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 28 4.7
At2g44990.1 68415.m05602 dioxygenase-related low similarity to c... 28 4.7
At4g10440.1 68417.m01716 dehydration-responsive family protein s... 27 8.2
At3g08850.1 68416.m01029 transducin family protein / WD-40 repea... 27 8.2
At1g33170.1 68414.m04096 dehydration-responsive family protein s... 27 8.2
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 179 bits (435), Expect = 2e-45
Identities = 92/143 (64%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 FQHFLQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 409
F F AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 410 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLN 583
T+GKEIVDL LDR+RKLAD CTGLQGFL+F++ LGSL L
Sbjct: 109 TVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168
Query: 584 WSSPSTPRLRFSTAVVEPYNSIL 652
++ +P++ STAVVEPYNS+L
Sbjct: 169 FTIYPSPQV--STAVVEPYNSVL 189
Score = 107 bits (256), Expect = 8e-24
Identities = 43/63 (68%), Positives = 51/63 (80%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 267 TYP 275
P
Sbjct: 61 HVP 63
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 179 bits (435), Expect = 2e-45
Identities = 92/143 (64%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 FQHFLQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 409
F F AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 410 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLN 583
T+GKEIVDL LDR+RKLAD CTGLQGFL+F++ LGSL L
Sbjct: 109 TVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168
Query: 584 WSSPSTPRLRFSTAVVEPYNSIL 652
++ +P++ STAVVEPYNS+L
Sbjct: 169 FTIYPSPQV--STAVVEPYNSVL 189
Score = 107 bits (256), Expect = 8e-24
Identities = 43/63 (68%), Positives = 51/63 (80%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 267 TYP 275
P
Sbjct: 61 HVP 63
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 178 bits (434), Expect = 2e-45
Identities = 93/143 (65%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 FQHFLQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 409
F F AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 410 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLN 583
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ LGSL L
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168
Query: 584 WSSPSTPRLRFSTAVVEPYNSIL 652
++ +P++ ST+VVEPYNS+L
Sbjct: 169 FTVYPSPQV--STSVVEPYNSVL 189
Score = 124 bits (299), Expect = 5e-29
Identities = 50/63 (79%), Positives = 56/63 (88%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSET
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 267 TYP 275
P
Sbjct: 61 HVP 63
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 178 bits (434), Expect = 2e-45
Identities = 93/143 (65%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 FQHFLQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 409
F F AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 410 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLN 583
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ LGSL L
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168
Query: 584 WSSPSTPRLRFSTAVVEPYNSIL 652
++ +P++ ST+VVEPYNS+L
Sbjct: 169 FTVYPSPQV--STSVVEPYNSVL 189
Score = 124 bits (299), Expect = 5e-29
Identities = 50/63 (79%), Positives = 56/63 (88%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSET
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 267 TYP 275
P
Sbjct: 61 HVP 63
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 178 bits (434), Expect = 2e-45
Identities = 93/143 (65%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 FQHFLQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 409
F F AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 410 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLN 583
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ LGSL L
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168
Query: 584 WSSPSTPRLRFSTAVVEPYNSIL 652
++ +P++ ST+VVEPYNS+L
Sbjct: 169 FTVYPSPQV--STSVVEPYNSVL 189
Score = 125 bits (302), Expect = 2e-29
Identities = 50/63 (79%), Positives = 57/63 (90%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSET
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 267 TYP 275
P
Sbjct: 61 HVP 63
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 178 bits (434), Expect = 2e-45
Identities = 93/143 (65%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 FQHFLQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 409
F F AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 410 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLN 583
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ LGSL L
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168
Query: 584 WSSPSTPRLRFSTAVVEPYNSIL 652
++ +P++ ST+VVEPYNS+L
Sbjct: 169 FTVYPSPQV--STSVVEPYNSVL 189
Score = 125 bits (302), Expect = 2e-29
Identities = 50/63 (79%), Positives = 57/63 (90%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSET
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 267 TYP 275
P
Sbjct: 61 HVP 63
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 170 bits (414), Expect = 6e-43
Identities = 86/143 (60%), Positives = 105/143 (73%), Gaps = 2/143 (1%)
Frame = +2
Query: 230 FQHFLQRDRAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 409
F F +G+HVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 410 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLN 583
T+G+EIVD L+R+RKLAD CTGLQGFL+F++ LGSL L
Sbjct: 109 TVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLG 168
Query: 584 WSSPSTPRLRFSTAVVEPYNSIL 652
++ +P++ STAVVEPYNS+L
Sbjct: 169 FTIYPSPQV--STAVVEPYNSVL 189
Score = 107 bits (257), Expect = 6e-24
Identities = 43/63 (68%), Positives = 51/63 (80%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 267 TYP 275
P
Sbjct: 61 HVP 63
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 106 bits (254), Expect = 1e-23
Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
G++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 116
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L L +S +P++
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV- 175
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 176 -SDTVVEPYNATL 187
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 191
MRE + + GQ G QIG+ WE+ C EHGI P G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGR 35
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 104 bits (250), Expect = 4e-23
Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L L +S +P++
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV- 176
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 177 -SDTVVEPYNATL 188
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 203
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD 39
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 103 bits (248), Expect = 8e-23
Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
G++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L + +S +P++
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV- 175
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 176 -SDTVVEPYNATL 187
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 267 TYP 275
P
Sbjct: 59 YVP 61
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 103 bits (247), Expect = 1e-22
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
G+ VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L L +S +P++
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV- 175
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 176 -SDTVVEPYNATL 187
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 191
MRE + + GQ G QIG WE+ C EHGI G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGR 35
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 103 bits (246), Expect = 1e-22
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
G++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 58 GRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAV 117
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L L +S +P++
Sbjct: 118 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV- 176
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 177 -SDTVVEPYNATL 188
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSE 251
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNE 54
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 102 bits (244), Expect = 2e-22
Identities = 54/133 (40%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L + +S +P++
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV- 175
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 176 -SDTVVEPYNATL 187
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSE 251
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNE 53
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 101 bits (241), Expect = 5e-22
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L L +S +P++
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV- 175
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 176 -SDTVVEPYNATL 187
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 267 TYP 275
P
Sbjct: 59 FVP 61
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 101 bits (241), Expect = 5e-22
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
G+ VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ C LQGF + HS +G+L L +S +P++
Sbjct: 117 LDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKV- 175
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 176 -SDTVVEPYNATL 187
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETELAS 266
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 267 TYP 275
P
Sbjct: 59 FVP 61
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 98.3 bits (234), Expect = 4e-21
Identities = 53/133 (39%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Frame = +2
Query: 260 GKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLV 439
GK+VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D V
Sbjct: 57 GKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSV 116
Query: 440 LDRIRKLADQCTGLQGFLIFHSF--VEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLR 613
LD +RK A+ LQGF + HS +G+L + +S +P++
Sbjct: 117 LDVVRKEAENSDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKV- 175
Query: 614 FSTAVVEPYNSIL 652
S VVEPYN+ L
Sbjct: 176 -SDTVVEPYNATL 187
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +3
Query: 87 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTI 212
MRE + + GQ G QIG WE+ C EHGI GQ D +
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL 42
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 70.5 bits (165), Expect = 9e-13
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Frame = +2
Query: 266 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLV 439
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 440 LDRIRKLADQCTGLQGFLIFHSFVEVPALGSLPY*W-SVSPLTTARSLNWSSPSTPRLRF 616
+D I + AD L+GF++ HS G Y +++ + + + S ++
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMET 178
Query: 617 STAVVEPYNSIL 652
S VV+PYNS+L
Sbjct: 179 SDVVVQPYNSLL 190
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +3
Query: 90 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETE 257
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQAD 56
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 70.1 bits (164), Expect = 1e-12
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Frame = +2
Query: 266 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLV 439
++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++ GK + + +
Sbjct: 60 YIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ-GKGVEEEI 118
Query: 440 LDRIRKLADQCTGLQGFLIFHSFVEVPALGSLPY*W-SVSPLTTARSLNWSSPSTPRLRF 616
+D I + AD L+GF++ HS G Y +++ + + + S ++
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMET 178
Query: 617 STAVVEPYNSIL 652
S VV+PYNS+L
Sbjct: 179 SDVVVQPYNSLL 190
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/56 (44%), Positives = 32/56 (57%)
Frame = +3
Query: 90 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETE 257
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQAD 56
>At3g10650.1 68416.m01281 expressed protein
Length = 1309
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Frame = +1
Query: 49 NSTFKHRKKLKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSL---MARCPQTRPSGV 219
+S F +R K + SL T KP + + G T S S MAR P +RP
Sbjct: 260 DSVFLNRTPFPQKSPTMSLVT--KPSGQRPLENGFVTPRSRGRSAVYSMARTPYSRPQSS 317
Query: 220 ETILSTLSSARPSWQARTP 276
I S ++ W+ P
Sbjct: 318 VKIGSLFQASPSKWEESLP 336
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 496 LPLLRGGTGSGFTSLLMERLSVDYGKKSKLEF 591
LP GG+GSG L+M SV K++ L+F
Sbjct: 422 LPCSSGGSGSGLKELMMGNSSVFGPKQTTLDF 453
>At2g44990.1 68415.m05602 dioxygenase-related low similarity to
carotenoid cleavage dioxygenase 1 [Arabidopsis thaliana]
GI:3096910; contains Pfam profile PF03055: Retinal
pigment epithelial membrane protein
Length = 618
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +2
Query: 488 FLIFHSFVEVPALGSLPY*WSVSPLTTARSLNWSSPSTP 604
+++F + V++ +GS+ +SP+ +A SLN S+ S+P
Sbjct: 328 YILFANRVKLNPIGSIAAMCGMSPMVSALSLNPSNESSP 366
>At4g10440.1 68417.m01716 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -3
Query: 455 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 366
C P PN + PF+W ++ + ++P++
Sbjct: 136 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 165
>At3g08850.1 68416.m01029 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein mip1
(SP:P87141) [Schizosaccharomyces pombe]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 1 weak)
Length = 1344
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +1
Query: 67 RKKLKSKCVSASL---YTLAKPESRSVMPAGSFTAWSTASSLMARCPQTRPSGVETILST 237
++++K+ CV+ L T+ P+ + P AW S+ P +ETI
Sbjct: 101 KERMKTGCVALVLCLNITVDPPDVIKISPCARIEAWIDPFSMAP------PKALETIGKN 154
Query: 238 LSSARPSWQAR 270
LS+ WQ R
Sbjct: 155 LSTQYERWQPR 165
>At1g33170.1 68414.m04096 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 639
Score = 27.5 bits (58), Expect = 8.2
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -3
Query: 455 CGFCPKPNLRFPFQWCSDHGHSCWPHLPYQ 366
C P PN + PF+W ++ + ++P++
Sbjct: 153 CLIPPPPNYKIPFKWPQSRDYAWYDNIPHK 182
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,913,732
Number of Sequences: 28952
Number of extensions: 332680
Number of successful extensions: 1015
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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