Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120810.seq
         (656 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6; Nucle...    81   2e-14
UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7; Nucle...    66   7e-10
UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Re...    46   0.001
UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Re...    39   0.12 
UniRef50_Q5A9D0 Cluster: Putative uncharacterized protein; n=1; ...    36   1.1  
UniRef50_Q91BA2 Cluster: Calyx protein; n=2; Nucleopolyhedroviru...    33   8.0  

>UniRef50_P24728 Cluster: Polyhedral envelope protein; n=6;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 252

 Score = 81.4 bits (192), Expect = 2e-14
 Identities = 44/75 (58%), Positives = 47/75 (62%)
 Frame = +1

Query: 67  QIFDALEKIRHXXXXXXXXXXXXXXXXXXXFLELSNVMTGVRNQNVQLLAALETAKDVIL 246
           QIFDALEKIRH                   FLELSN+MTGVRNQNVQLLAALETAKDVIL
Sbjct: 151 QIFDALEKIRHQNDMLMSNVNQINLNQTNQFLELSNMMTGVRNQNVQLLAALETAKDVIL 210

Query: 247 TRLTRCFPKLQTRYP 291
           TRL     ++    P
Sbjct: 211 TRLNTLLAEITDSLP 225



 Score = 63.7 bits (148), Expect = 4e-09
 Identities = 30/37 (81%), Positives = 35/37 (94%)
 Frame = +3

Query: 249 QINTLLSEITDSLPDLTLMLDKLAEQLLEAINXMQQT 359
           ++NTLL+EITDSLPDLT MLDKLAEQLL+AIN +QQT
Sbjct: 212 RLNTLLAEITDSLPDLTSMLDKLAEQLLDAINTVQQT 248


>UniRef50_P17498 Cluster: Polyhedral envelope protein; n=7;
           Nucleopolyhedrovirus|Rep: Polyhedral envelope protein -
           Orgyia pseudotsugata multicapsid polyhedrosis virus
           (OpMNPV)
          Length = 297

 Score = 66.1 bits (154), Expect = 7e-10
 Identities = 31/55 (56%), Positives = 43/55 (78%)
 Frame = +3

Query: 249 QINTLLSEITDSLPDLTLMLDKLAEQLLEAINXMQQTQRNELNNTNSILTNLASS 413
           ++N L+ +I  +LPD +  L +LA++LL+AIN + QT R E+NNTNSILTNLASS
Sbjct: 190 RLNALVDDIKAALPDQSAQLQELADKLLDAINSVAQTLRGEMNNTNSILTNLASS 244



 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 32/75 (42%), Positives = 37/75 (49%)
 Frame = +1

Query: 67  QIFDALEKIRHXXXXXXXXXXXXXXXXXXXFLELSNVMTGVRNQNVQLLAALETAKDVIL 246
           QI DALEK+                     FLELSN +  VR QN Q+LAALET KD IL
Sbjct: 129 QILDALEKLARQSDLVVNSLNQISLNQSNQFLELSNTLNTVRAQNAQILAALETTKDAIL 188

Query: 247 TRLTRCFPKLQTRYP 291
           TRL      ++   P
Sbjct: 189 TRLNALVDDIKAALP 203


>UniRef50_Q0N3Y8 Cluster: CALYX/PEP; n=6; Nucleopolyhedrovirus|Rep:
           CALYX/PEP - Clanis bilineata nucleopolyhedrosis virus
          Length = 338

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 25/55 (45%), Positives = 31/55 (56%)
 Frame = +3

Query: 249 QINTLLSEITDSLPDLTLMLDKLAEQLLEAINXMQQTQRNELNNTNSILTNLASS 413
           QI T+ SEI   L D+    D+L   L  A+  +Q   RNEL N N+IL NL SS
Sbjct: 230 QIATIASEIERLLGDVDRRFDQLLAALTAALAQLQDAVRNELTNVNAILNNLTSS 284


>UniRef50_A0EZ11 Cluster: Calyx/pep; n=2; Nucleopolyhedrovirus|Rep:
           Calyx/pep - Ecotropis obliqua NPV
          Length = 330

 Score = 38.7 bits (86), Expect = 0.12
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = +3

Query: 246 DQINTLLSEITDSLPDLTLMLDKLAEQLLEAINXMQQTQRNELNNTNSILTNLASS 413
           +Q+  + +++   L +    L+   + L +A+  +Q + RNEL N NSIL NL SS
Sbjct: 217 NQLVNIAADLRSLLDNFDTKLNNFLDALNKALAQLQDSVRNELTNINSILNNLTSS 272


>UniRef50_Q5A9D0 Cluster: Putative uncharacterized protein; n=1;
           Candida albicans|Rep: Putative uncharacterized protein -
           Candida albicans (Yeast)
          Length = 195

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 23/95 (24%), Positives = 46/95 (48%)
 Frame = -2

Query: 634 LFFVGVLSXMLILLSTFPVSIFLNIVNQSVHEVQFLSVGFVKLXXXXXXXXXXXPAKFSI 455
           L  + ++   LI L+   VS+ L +V + V  +  ++V F                  ++
Sbjct: 70  LLLLLLIMETLIFLALSLVSLILGVVFEIVEALILVAVVFALTFVLTWVWAWILALALTL 129

Query: 454 AVSKLLSVPLMFVMLDAKLVKIELVLFNSLRCVCC 350
           A++  L++ L+ ++ +A L +  LVLF++   VCC
Sbjct: 130 ALALTLTLTLLLLVAEASLSESVLVLFSNRSRVCC 164


>UniRef50_Q91BA2 Cluster: Calyx protein; n=2;
           Nucleopolyhedrovirus|Rep: Calyx protein - Spodoptera
           litura multicapsid nucleopolyhedrovirus (SpltMNPV)
          Length = 344

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 246 DQINTLLSEITDSLPDLTLMLDKLAEQLLEAINX----MQQTQRNELNNTNSILTNLASS 413
           + I T  + +  SL  L   L+      L A+N     +Q+T R E+ + NS+++NLA+S
Sbjct: 238 EAIETGFNNVEQSLESLIAGLETRLSSALNALNDILVRLQETVRAEITSLNSVISNLAAS 297


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,120,290
Number of Sequences: 1657284
Number of extensions: 8616361
Number of successful extensions: 23929
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23906
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)