Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120810.seq
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    30   0.26 
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   2.4  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   4.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    25   9.6  

>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 531 NWTSCTLWLTIFKNILTGNVDNKISMXD 614
           NW SC  W      I TG++DN I   D
Sbjct: 178 NWVSCVAWAPDASIIATGSMDNTIRFWD 205


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 156 LISLVEIYLVDVVIQHVVLMTNFFQRVEYL 67
           L+SL  +YLV    QH++     FQRV +L
Sbjct: 303 LVSLFILYLVRYTCQHLIKRYTKFQRVFFL 332


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +3

Query: 246 DQINTLLSEITDSLPDLTLMLDKLAEQLLEAINXMQQTQRNELNNTNSILTNL 404
           +Q+N  L+E+ D L D+T  L    E  +     +  + + + ++  + +T L
Sbjct: 773 NQVNARLTEVQDRLKDITDKLASAREDAMSLYGSVVDSLQTQSSDRQTAITEL 825


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +2

Query: 419 KHQWYAQQFADRYRKL 466
           KHQ+Y ++FAD +R++
Sbjct: 404 KHQYYDEEFADVWREI 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,902
Number of Sequences: 5004
Number of extensions: 36704
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)