Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120810.seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420...    31   1.1  
01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970           28   7.5  
04_01_0619 - 8125611-8127967,8128449-8130123                           27   9.9  

>04_04_1076 -
           30639835-30640898,30641613-30641915,30642008-30642068,
           30643076-30644380
          Length = 910

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 572 YTHGER*QQNKHVRQNADKKKRRP 643
           +THGER +Q +H  +N D   +RP
Sbjct: 558 HTHGERCEQRRHTGENIDDMPKRP 581


>01_01_0280 + 2295043-2295154,2295258-2295475,2295558-2296970
          Length = 580

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 352 CIXLMASNNCSANLSN-MSVKSGNESVISESNVLIWS 245
           C   +A    S NL N M  + G ES I+ +NV  WS
Sbjct: 41  CCERLAYYGMSTNLVNYMKTRLGQESAIAANNVTNWS 77


>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 519 PTDKNWTSCTLWLTIFKNILTGNVDNKISMXDKTPTKKSGGHAMT 653
           P+  +  S  +WL I  N LTG +   I + DK       G++++
Sbjct: 490 PSTLSNLSNLVWLDISNNQLTGTIPESIKLMDKLQLLNLSGNSLS 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,301,596
Number of Sequences: 37544
Number of extensions: 239362
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)