Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120810.seq
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   29   3.3  
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 338 HQXDAANAAQRVEQHQLYFDQFSVEHHKHQWYAQQFADRYRK 463
           HQ      + R+ +HQ +  ++S   +KHQ +  ++++R  K
Sbjct: 38  HQKHITEYSNRIYKHQKHLTEYSNRIYKHQKHLTEYSNRIYK 79



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 338 HQXDAANAAQRVEQHQLYFDQFSVEHHKHQWYAQQFADRYRK 463
           HQ      + R+ +HQ +  ++S   +KHQ +  ++++R  K
Sbjct: 52  HQKHLTEYSNRIYKHQKHLTEYSNRIYKHQKHITEYSNRIYK 93


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 515 EADRQKLDLVHTLVNDIQKYTHGER*QQNKHVRQNADKKKRR 640
           +A RQ+LD +H L  + +++   +  Q  +HVR    + K+R
Sbjct: 397 DAFRQRLDDLHWLDEETKQHVRDKVKQTKQHVRDKVKQTKQR 438


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,323
Number of Sequences: 59808
Number of extensions: 281238
Number of successful extensions: 733
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)