Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120810.seq
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical...    29   2.2  
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    29   2.2  
Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   8.9  

>Z48582-5|CAA88467.3|  377|Caenorhabditis elegans Hypothetical
           protein F27E5.5 protein.
          Length = 377

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = -2

Query: 94  EFFPARRIFVAVLAWETMNVTAI*TGTEIAN 2
           E+  AR IFVAV+A   MN+TA+ T  ++ +
Sbjct: 184 EYSTARAIFVAVVAGAVMNITAVLTFRKVVS 214


>Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical
           protein F11F1.8 protein.
          Length = 176

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
 Frame = +3

Query: 243 FDQINTLLSEITD---SLPDLTLMLDKLAE-------QLLEAINXMQQTQRNELNNTNSI 392
           F  I  LL+E+ D   SLPD+   L K+ +       + ++AIN ++ T + ELN    I
Sbjct: 97  FKLIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAINQLRGTNKIELNTIIFI 156

Query: 393 LTNL 404
           +T L
Sbjct: 157 ITQL 160


>AC024746-14|AAF60406.1|  227|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12b protein.
          Length = 227

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 157 FLELSNVMTGVRNQNVQLLAALETAKDVILTRLTRCFP 270
           F  +SNV+TG+ N  + L+A+L T        ++ C P
Sbjct: 185 FFLVSNVLTGLVNSRLMLIASLRTLPSPFSWHMSLCAP 222


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 157 FLELSNVMTGVRNQNVQLLAALETAKDVILTRLTRCFP 270
           F  +SNV+TG+ N  + L+A+L T        ++ C P
Sbjct: 438 FFLVSNVLTGLVNSRLMLIASLRTLPSPFSWHMSLCAP 475


>Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical
           protein F11F1.5 protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
 Frame = +3

Query: 243 FDQINTLLSEITD---SLPDLTLMLDKLAE-------QLLEAINXMQQTQRNELNNTNSI 392
           F  I  LL+E+ D   SLPD+   L K+ +       +   AIN ++ T + ELN    I
Sbjct: 167 FTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKNNAINQLKGTNKIELNTIIFI 226

Query: 393 LTNL 404
           +T L
Sbjct: 227 ITQL 230


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 412 LDAKLVKIELVLFNSLRCVCCIXLMASNNCSANLSNMSVKSGNESVISESNVL 254
           LDAKL +    L + + C+        NNC   + N+ ++ G+E  +++  VL
Sbjct: 663 LDAKLCEDYGNLEDIVLCIFISMEELPNNCEIIMGNLIIEGGDEDYVTKLRVL 715


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 365  QRVEQHQLYFDQFSVEHHKHQ 427
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1565 QQHQQHQQYMQQQQQHHHQHQ 1585


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 365  QRVEQHQLYFDQFSVEHHKHQ 427
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 365  QRVEQHQLYFDQFSVEHHKHQ 427
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,362,588
Number of Sequences: 27780
Number of extensions: 217045
Number of successful extensions: 616
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)