Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120810.seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.039
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.039
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = +2

Query: 371 VEQHQLYFDQFSVEHHKHQWYAQQFADRYRKLSXXXXXXXXXXXXQFNEADRQKLDLVHT 550
           ++QH LY  Q   +HH+    + + A    +              QF E  R+KL+    
Sbjct: 92  MQQHSLYLQQQQQQHHQDS--SSEHASNQERFG--YFSSLKDHQHQFAELGRKKLE---Q 144

Query: 551 LVNDIQKYTHGER*QQNKHVRQNADKKK 634
            +  +Q+       QQ  H+ Q ADKKK
Sbjct: 145 AIQQLQEQLQLNVIQQT-HLLQTADKKK 171


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 149 VWLRFIW 129
           VWLRFIW
Sbjct: 77  VWLRFIW 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,947
Number of Sequences: 438
Number of extensions: 2612
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)