Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120810.seq
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03110.1 68416.m00307 exportin 1, putative strong similarity ...    31   0.89 
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex...    29   2.7  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    29   3.6  
At4g18240.1 68417.m02709 starch synthase-related protein contain...    27   8.3  

>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1076

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 649 MAWPPLFFVGVLSXMLILLSTFPVSIFLNIVNQSVHEVQFLSVG 518
           ++W PL ++     + ILL  FPV  + N+  Q + EV  L+ G
Sbjct: 224 LSWIPLGYIFESPLLEILLKFFPVPAYRNLTLQCLSEVASLNFG 267


>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510
          Length = 1075

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 649 MAWPPLFFVGVLSXMLILLSTFPVSIFLNIVNQSVHEVQFLSVG 518
           ++W PL ++   + +  LL  FPV  + N+  Q + EV  L+ G
Sbjct: 224 LSWIPLGYIFESTLLETLLKFFPVPAYRNLTIQCLTEVAALNFG 267


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 510 LTKPTDKNWTSCT--LWLTIFKNILTGNVDNKISMXDKTPTKKSGGHAMT 653
           LT    ++ + CT  LW+++  N+LTG +   I   +K    + G +++T
Sbjct: 487 LTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLT 536


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
 Frame = +3

Query: 249 QINTLLSEITD---SLPDLTLMLDKLAEQLLEAINXMQQTQ--RNELNNTNSIL 395
           Q++TL  E TD    +  L L+LD+  +Q  +A+  +QQ Q  RN+++     L
Sbjct: 343 QLSTLKIECTDLWAKVETLQLLLDRATKQAEQAVIVLQQNQDLRNKVDKIEESL 396


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,510
Number of Sequences: 28952
Number of extensions: 192192
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)