Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120809.seq
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    28   1.0  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   2.3  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    27   3.1  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    26   4.1  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   7.1  

>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 270 LDLESGAAAATAQYMFQQYMEYASVAGPNYDDF 368
           L +    +A++A++ FQQ     S+ GPN  D+
Sbjct: 853 LQVMQSLSASSAEFYFQQLTTLTSIIGPNIRDY 885


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 313 MYCAVAAAAPDSKSRARYLYRLICKHCGTRRRECYRH 203
           ++  + A AP    R    +RL C+ CG   ++C +H
Sbjct: 544 LFAVLGAFAPTMLFRIYGPFRLDCEPCGANCQKCTKH 580


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 118 AVRSHGYLSLPTARQYKCFKDGNFYWPHNGDNIPDAACRNAYKSVYINI 264
           A+ + G+L+LP+   Y CF     Y+   G N   A       SV +N+
Sbjct: 217 AIHTKGFLNLPSGVWYLCFNTLAQYFCVRGVNALGAETSALTVSVVLNV 265


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 616 YWIATIPV*FS--NKHFKIAGLVYGRWTKMNIHPINRL 509
           Y I+ IP   S  N H  I  +V   W+K+ IHP N +
Sbjct: 296 YSISNIPKDESKRNSHLSILAIV-DSWSKLGIHPQNHM 332


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -2

Query: 348 RPQTRIPYTVETCIALWQRPPRILNRELDIYI 253
           + Q +I YT+E C + + + PRIL+ ++ I I
Sbjct: 391 KDQLKIDYTLEVCFSAFFK-PRILSIQIPITI 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,699
Number of Sequences: 5004
Number of extensions: 57467
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)