Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120809.seq
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890...    30   1.8  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    28   7.4  
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557...    27   9.7  

>06_03_1384 +
           29786028-29786657,29788581-29788711,29788987-29789028,
           29789383-29789441,29789774-29790070,29790180-29790289,
           29790966-29791070,29791201-29791263,29791766-29791933,
           29792111-29792248
          Length = 580

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 261 YRALDLESGAAAATAQYMFQQYMEYASVAGPNYDDFDLIKQRVV 392
           YR +D E   AAA + Y  +    +  +AG  +  F+    RV+
Sbjct: 485 YRRMDFEEFCAAAISPYQLEALERWEEIAGTAFQQFEQEGNRVI 528


>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
            7472855-7473019,7473689-7474821,7474902-7475426,
            7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 157  GPSAGTDSRESALPARESQQTMQLIMQS 74
            G   G  S  SA+PA E + T+QL+ QS
Sbjct: 1203 GYENGHGSSRSAMPAEEQRNTLQLLNQS 1230


>06_03_0175 +
           17553447-17553667,17555313-17555467,17555625-17555713,
           17556253-17556376,17556920-17556989,17557345-17557441,
           17559365-17559427,17559504-17559581,17559675-17559737
          Length = 319

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 459 DEPLNNWKPDTLYL 500
           DE + +WKP+TLYL
Sbjct: 197 DEKIQDWKPETLYL 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,862
Number of Sequences: 37544
Number of extensions: 385737
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)